G38607


Basic Information

Item Value
gene id G38607
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1294543 ~ 1390044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45762
GGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCCCTACTGCCCACACCGAGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCGTTAATCTCCTCTACTGCCCACACCGGGAGCATCTCCTCTACCTGCCCACACCGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACATATTGAGAACCAGCtccaaacagtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtttcagtcagagTGACACTAACTGTAAGGAGACAGTAGCGTGTGACAGCAGGTACTTATGTTCTTGTATGTGTCGGAGAGATGACACGTAGTTAAGgaaagtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtg
>TU45763
GGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACATATTGAGAACCAGCtccaaacagtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtttcagtcagagTGACACTAACTGTAAGGAGACAGTAGCGTGTGACAGCAGGTACTTATGTTCTTGTATGTGTCGGAGAGATGACACGTAGTTAAGgaaagtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtg
>TU45764
GGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACATATTGAGAACCAGCtccaaacagtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtttcagtcagagTGACACTAACTGTAAGGAGACAGTAGCGTGTGACAGCAGGTACTTATGTTCTTGTATGTGTCGGAGAGATGACACGTAGTTAAGgaaagtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtcctgtcaacaaggtgtgtgtgcaggagataAAGGAGTGACAGAATGATGAAAGTGTTGGGGATCTTCCACTCATGCCTAAcaattcctcacacacacacacacacacacacacacacacacagacctggtCACTGTCCAATCAGATGACAGCAAATTCGGCCAATTAGAAGAGGAGCTGTGTGTGTCAAGGGCAGCGGGGCACGACACCTACTGCCCTCATACACCCACATTAATACTACAggagacacacactctctctcacacacacacacacacacacacacacacacacacacctcccgtAATGGCCGagatgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtttgacctCCTGTATGAGGGAGTTTCTTAATCAGGTCCCAGTTGAGCCACTTCTGCTCTGTCTACTCCAtccaaacaacacacacacacacacacacacacacacacacacacacacacaccacaccacagtgagtgtgtttacGCTGTCTCTGTGTAAATATGTCCGTGTTCACACACACTTGGAGAGAGGGTGAAAGCCTGACCtctgcacgcacgcacacacacacacacacacacacacacacacacacacacggaataTAATACACTGACTGTTCTGCTAcacaaagttttggcacccctgTATCTTTGGGTGGTTTATTCTCAGTACGACACCAACACTGACacgtgcatgcatgtgtgtatgtacctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtgtctgcagttcagtgtgtgtgtacctgcagtgtgtgtgtcagtgtctgcagttcagtgtgtgtgtgtgtacctgcagtgtgtgtgtcagtgtctgcagttcagtgtgtgtgtgttggtatttGAGTCGCTCATCCTGCGCCGCCCTGCTGGCCGCCTGCAGAACTGCGACCTGCTGCTGCAGACAGGCGAGCCTCTGAGTGAACACGGCACACACACGCCTCCTCTTCATcaccctcctcttcctcactgctgcatcctcacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45762 False 910 lncRNA 0.54 2 1294543 1390044
TU45763 False 373 lncRNA 0.50 3 1294543 1390044
TU45764 True 1451 lncRNA 0.51 3 1294543 1296526

Neighbor

gene id symbol gene type direction distance location
foxe1 foxe1 coding upstream 36587 1249073 ~ 1257956 (+)
spag5 spag5 coding upstream 103297 1179478 ~ 1191246 (+)
LOC113524617 NA coding upstream 117699 1171885 ~ 1176844 (+)
hemgn NA coding upstream 129174 1162619 ~ 1165369 (+)
uso1 uso1 coding upstream 199622 1072737 ~ 1094921 (+)
bnc2 bnc2,LOC107595060 coding downstream 4153 1394197 ~ 1583922 (+)
psip1a psip1,LOC108262878,LOC108439950,LOC106610301 coding downstream 394496 1784540 ~ 1806551 (+)
dnajb14 dnajb14 coding downstream 432212 1822256 ~ 1847413 (+)
LOC117596857 pla2g12a,LOC108263807 coding downstream 458181 1848225 ~ 1853432 (+)
LOC113524724 LOC104953273 coding downstream 466477 1856521 ~ 1860800 (+)
G38623 NA non-coding upstream 23242 1270197 ~ 1271301 (+)
G38596 NA non-coding upstream 135215 1158426 ~ 1159328 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding upstream 141217 1119294 ~ 1153326 (+)
G38593 NA non-coding upstream 157517 1136664 ~ 1137026 (+)
G38585 NA non-coding upstream 225226 1068247 ~ 1069317 (+)
G38676 NA non-coding downstream 72418 1462462 ~ 1464437 (+)
G38681 NA non-coding downstream 88513 1478557 ~ 1479139 (+)
G38687 NA non-coding downstream 108124 1498168 ~ 1521254 (+)
G38709 NA non-coding downstream 373827 1763871 ~ 1764353 (+)
G38721 NA non-coding downstream 416590 1806634 ~ 1814009 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 69942 1194219 ~ 1224601 (+)
trmo trmo other upstream 105949 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 152609 1102778 ~ 1141934 (+)
G38577 NA other upstream 229212 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 549544 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 593603 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 635444 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2441823 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 3274272 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3873538 5263582 ~ 5357860 (+)

Expression


Co-expression Network