G38608


Basic Information

Item Value
gene id G38608
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1250800 ~ 1772777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45767
TTTCTCTCCAGCTCGTCGATGTGTGAGCGATGGCTGCGCTCTGAATCCTGCAGGACCTTCAGCCGACTGCGCAGATCCTCCACCAACTGTCTCTTCATCACCACATCCCTCTCACAGTGacacaccctgtacacacacacacacacacacacgcaCACACGCAATGTAAATACATGCTAGAGTACCATCATAATGGTACTATTATGGTCTACACTATGATCGTCGCTCACatatgacatcatcaaaaagtggcaaccaaacacacacagtgatggaaAATTCACTTAAACAGCCgcataacccgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgattctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgattctgaataccaggaactttcctcactgactctgaataccaggaactttcctcaccgactctgaacaccaggaactttcctcactgactctgaacaccaggaacttttctcatgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgactctgaacaccaggaacttttctcatgactctgaacaccaggaactttcctcaccgactctgaataccaggaactttcctcaccgactctgaacaccaggaactttcctcaccgactctgaacaccaggaactttcctcactgactctgaataccaggaactttccccactgactctgaacaccag
>TU45770
cacacacacacacacacacacacacacacacacacacacacacgcacACACGCAATGTAAATACATGCTAGAGTACCATCATAATGGTACTATTATGGTCTACACTATGATCGTCGCTCACatatgacatcatcaaaaagtggcaaccaaacacacacagtgatggaaAATTCACTTAAACAGCCgcataacccgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgattctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgattctgaataccaggaactttcctcactgactctgaataccaggaactttcctcaccgactctgaacaccaggaactttcctcactgactctgaacaccaggaacttttctcatgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgactctgaacaccaggaacttttctcatgactctgaacaccaggaactttcctcaccgactctgaataccaggaactttcctcaccgactctgaacaccaggaactttcctcaccgactctgaacaccaggaactttcctcacctgactctgaacaccaggaactttcctcaccgactctgaacaccaggaactttccccaccgactctgaacaccaggaactttcctcaccgactctgaacaccaggaactttcctcaccgaCTCtcaataccaggaactttcctcaccgactctgaacaccaggaactttcctcaccgactctgaataccaggaactttcctcactgactgactctgactctgaaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaacaccaggaacttttctcatgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaacaccaggaactttcctcaccgactctgaacaccaggaactttcctcaccgactctgaacaccaggaactttcctcaccgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcccagTGTAAATACTAACACAACTATTGGTCACTAACTCTTACACTACACCATATTACAGTGTTTAGCGTTACAGTATTTAACACCTGACTTGCTATCACCCTGAACACAGTGTAGATTCAATATCAGTTCTGataatatttagtattttagtgtgtgttttaggacaCGGCCATGAAAGAacatgataaacacacacacatcatttatcCCAAACACTCTGATTACGAGGTGATCTACATGATCAAATCCTCCACACTGGAATTTAACACGTGTTTACACACACTAATGTGTGAAACTGCTCactttgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgctcagTAAGGGGAATTAAGGATTAAGCTCTTGTCTTATGCTAATGAGGCTGATTATTCAGATGTGCTGTGATTGGCAGATGTAATAGAGCGATCTCCGCCTGGCCCCAGTGCACTCTGGGAGTTTAACCAGTGTGAAGCAGAGGTCTAATCACGCTCTTACAGCTTTGTTAAAGACACACAggatttacttgtttgtttatttgtttgtttgtgagtgtttgtgagtgtgtgtgtgtgtgtgtttgtgtgtttgtgtgttttcactgaGGATTCAGAACCTTCTGAGGAACTGTGCTGAAGGAGAACACCACAGTTCCTGTTCCACGTTCCCGGGACTGATACAGAGACTAACGACCACCTCGTTTCAACACCACAGCAGACATGAAGCTTCCAAataaagtaacacacacacacacacacacacacacacacacacacacacactcctgattaGTGAGCATTACTGCTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCGGGGCTTTAATCTCCACTACCGCCCACACCGGGGCTTTAATCTCCACTACTGCCCACACCGGGGCTTTAATCTCCTCTACTGCCCACACCG
>TU45772
gtgtgtgtgtgtgtgtgtttctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgcaccttcAGCTTGTTGTTGAGCTGTTTGATTTCAGTCTCCAGTGTTCTGATGTTCGGGAGGTCAGGGTCGGGGACAGACACAGTGACTGACGCCTGTTGTGCTTCAGGGAGGCGGGACTTCCTCCACTGCTCTAACTCCGCCTCCAACACGGCCTTCTGCTGCTGCAGCACCGCCATCTCACACGACTGcttctgctcacacacacacacgcaCACACGCAATGTAAATACATGCTAGAGTACCATCATAATGGTACTATTATGGTCTACACTATGATCGTCGCTCACatatgacatcatcaaaaagtggcaaccaaacacacacagtgatggaaAATTCACTTAAACAGCCgcataacccgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgactctgaacaccaggaactttcctcactgattctgaataccaggaactttcctcaccgactctgaacaccaggaactttcctcactgactctgaataccaggaactttcctcactgactctgaataccaggaactttcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45767 False 925 lncRNA 0.47 4 1287572 1772777
TU45770 True 2279 lncRNA 0.46 5 1250800 1293634
TU45772 False 672 lncRNA 0.48 5 1272968 1634967

Neighbor

gene id symbol gene type direction distance location
spag5 spag5 coding upstream 59554 1179478 ~ 1191246 (+)
LOC113524617 NA coding upstream 73956 1171885 ~ 1176844 (+)
hemgn NA coding upstream 85431 1162619 ~ 1165369 (+)
uso1 uso1 coding upstream 155879 1072737 ~ 1094921 (+)
arhgef38 arhgef38 coding upstream 188926 1038675 ~ 1061874 (+)
psip1a psip1,LOC108262878,LOC108439950,LOC106610301 coding downstream 11763 1784540 ~ 1806551 (+)
dnajb14 dnajb14 coding downstream 49479 1822256 ~ 1847413 (+)
LOC117596857 pla2g12a,LOC108263807 coding downstream 75448 1848225 ~ 1853432 (+)
LOC113524724 LOC104953273 coding downstream 83744 1856521 ~ 1860800 (+)
LOC113524707 LOC108263800 coding downstream 91438 1864215 ~ 1872988 (+)
G38596 NA non-coding upstream 91472 1158426 ~ 1159328 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding upstream 97474 1119294 ~ 1153326 (+)
G38593 NA non-coding upstream 113774 1136664 ~ 1137026 (+)
G38585 NA non-coding upstream 181483 1068247 ~ 1069317 (+)
G38582 NA non-coding upstream 201371 1046243 ~ 1049429 (+)
G38721 NA non-coding downstream 33857 1806634 ~ 1814009 (+)
G38758 NA non-coding downstream 149061 1921838 ~ 1975630 (+)
G38759 NA non-coding downstream 152547 1925324 ~ 1928330 (+)
G38756 NA non-coding downstream 167203 1939980 ~ 1941750 (+)
G38761 NA non-coding downstream 169068 1941845 ~ 1966544 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 26199 1194219 ~ 1224601 (+)
trmo trmo other upstream 62206 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 108866 1102778 ~ 1141934 (+)
G38577 NA other upstream 185469 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 505801 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 210870 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 252711 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2059090 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2891539 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3490805 5263582 ~ 5357860 (+)

Expression


Co-expression Network