Gene
RNA
| Item | Value |
|---|---|
| gene id | G38721 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1806634 ~ 1814009 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU45903 | True | 1076 | lncRNA | 0.38 | 2 | 1806634 | 1814009 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| psip1a | psip1,LOC108262878,LOC108439950,LOC106610301 | coding | upstream | 83 | 1784540 ~ 1806551 (+) |
| bnc2 | bnc2,LOC107595060 | coding | upstream | 222712 | 1394197 ~ 1583922 (+) |
| foxe1 | foxe1 | coding | upstream | 548678 | 1249073 ~ 1257956 (+) |
| spag5 | spag5 | coding | upstream | 615388 | 1179478 ~ 1191246 (+) |
| LOC113524617 | NA | coding | upstream | 629790 | 1171885 ~ 1176844 (+) |
| dnajb14 | dnajb14 | coding | downstream | 8247 | 1822256 ~ 1847413 (+) |
| LOC117596857 | pla2g12a,LOC108263807 | coding | downstream | 34216 | 1848225 ~ 1853432 (+) |
| LOC113524724 | LOC104953273 | coding | downstream | 42512 | 1856521 ~ 1860800 (+) |
| LOC113524707 | LOC108263800 | coding | downstream | 50206 | 1864215 ~ 1872988 (+) |
| si:ch211-113e8.10 | zfp91,LOC107674257,LOC107737094 | coding | downstream | 67321 | 1881330 ~ 1891816 (+) |
| G38608 | NA | non-coding | upstream | 33857 | 1250800 ~ 1772777 (+) |
| G38709 | NA | non-coding | upstream | 42281 | 1763871 ~ 1764353 (+) |
| G38687 | NA | non-coding | upstream | 285380 | 1498168 ~ 1521254 (+) |
| G38681 | NA | non-coding | upstream | 327495 | 1478557 ~ 1479139 (+) |
| G38676 | NA | non-coding | upstream | 342197 | 1462462 ~ 1464437 (+) |
| G38758 | NA | non-coding | downstream | 107829 | 1921838 ~ 1975630 (+) |
| G38759 | NA | non-coding | downstream | 111315 | 1925324 ~ 1928330 (+) |
| G38756 | NA | non-coding | downstream | 125971 | 1939980 ~ 1941750 (+) |
| G38761 | NA | non-coding | downstream | 127836 | 1941845 ~ 1966544 (+) |
| G38796 | NA | non-coding | downstream | 241642 | 2055651 ~ 2056825 (+) |
| sh3gl2a | sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 | other | upstream | 582033 | 1194219 ~ 1224601 (+) |
| trmo | trmo | other | upstream | 618040 | 1165845 ~ 1188594 (+) |
| coro2a | coro2a | other | upstream | 664700 | 1102778 ~ 1141934 (+) |
| G38577 | NA | other | upstream | 741303 | 1063972 ~ 1065331 (+) |
| mtap | mtap,LOC108263789 | other | upstream | 1061635 | 722127 ~ 744999 (+) |
| cdk2ap2 | cdk2ap2 | other | downstream | 169638 | 1983647 ~ 1997265 (+) |
| stox2a | stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 | other | downstream | 211479 | 2025488 ~ 2091343 (+) |
| LOC113545357 | NA | other | downstream | 2017858 | 3831867 ~ 3834626 (+) |
| nr3c2 | nr3c2,LOC107598757 | other | downstream | 2850307 | 4664316 ~ 4771604 (+) |
| znf827 | znf827 | other | downstream | 3449573 | 5263582 ~ 5357860 (+) |
