G38759


Basic Information

Item Value
gene id G38759
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1925324 ~ 1928330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45971
ggtgcagtgctgattgtttacagattaaaggtgcagtgctgaaggtttacagattaaaggtgcagcgctgaaggtttacagattaaaggtgcagcgctgaaggtttacaggttaaaggtgcagtgctgaaggtttacaggttaaaggtgcagcgctgaaggtttacaggttaaaggtgcagtgctgaaggtttacaggttaaaggtgcagtgctgaaggtttacagattaaaggtgcagtgctgaaggtttacaggttaaattaaataaattaaataaaattaaataaataaataaacaaataaataaataaatacacacaacctACCAAATCTCTGTGTGAAATTCAGTCAGTTAAAGAGCTTCGTCGCTGTGTTTAGGCTTTATTTAAATCTCCGTAACGCCGCTTGATAAACGTGCTGAACGGGGAAGTGTTATTGCGTTACACAGAGTagctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45971 True 457 lncRNA 0.39 3 1925324 1928330

Neighbor

gene id symbol gene type direction distance location
cntf NA coding upstream 17672 1898791 ~ 1907652 (+)
si:ch211-113e8.10 zfp91,LOC107674257,LOC107737094 coding upstream 33508 1881330 ~ 1891816 (+)
LOC113524707 LOC108263800 coding upstream 52336 1864215 ~ 1872988 (+)
LOC113524724 LOC104953273 coding upstream 64524 1856521 ~ 1860800 (+)
LOC117596857 pla2g12a,LOC108263807 coding upstream 71892 1848225 ~ 1853432 (+)
ing2 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107737097,LOC107684977 coding downstream 86618 2014948 ~ 2018960 (+)
tmem134 tmem134,LOC107737124 coding downstream 180738 2109068 ~ 2118767 (+)
dctd dctd,cep44,LOC108263714,LOC107550883,LOC107671033,LOC100699771,LOC107684975,LOC102306286 coding downstream 223599 2151929 ~ 2163692 (+)
LOC113546173 NA coding downstream 237293 2165623 ~ 2165784 (+)
LOC113544637 NA coding downstream 246257 2174587 ~ 2184648 (+)
G38721 NA non-coding upstream 111315 1806634 ~ 1814009 (+)
G38709 NA non-coding upstream 160971 1763871 ~ 1764353 (+)
G38687 NA non-coding upstream 404070 1498168 ~ 1521254 (+)
G38681 NA non-coding upstream 446185 1478557 ~ 1479139 (+)
G38676 NA non-coding upstream 460887 1462462 ~ 1464437 (+)
G38756 NA non-coding downstream 11650 1939980 ~ 1941750 (+)
G38761 NA non-coding downstream 13515 1941845 ~ 1966544 (+)
G38796 NA non-coding downstream 127321 2055651 ~ 2056825 (+)
G38812 NA non-coding downstream 195131 2123461 ~ 2126667 (+)
G38826 NA non-coding downstream 236840 2165170 ~ 2165485 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 700723 1194219 ~ 1224601 (+)
trmo trmo other upstream 736730 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 783390 1102778 ~ 1141934 (+)
G38577 NA other upstream 859993 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 1180325 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 55317 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 97158 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 1903537 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2735986 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3335252 5263582 ~ 5357860 (+)

Expression


Co-expression Network