G38948


Basic Information

Item Value
gene id G38948
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2411201 ~ 2426600 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU46183
atttctctctctctctgtgtgtgtgtgtgtgtgtgtgtgaaatctgtaaaacacacacgctcGTGTGTGAAGTCTGACATTTTGCAGttgttagctaacatttgaATTATTCCGAAGAGAAGCTGATTCTGTTGGAgctgactttttattttaataaaaacaagtaCAGCAGGAAaggacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46183 True 216 lncRNA 0.40 2 2411201 2426600

Neighbor

gene id symbol gene type direction distance location
LOC113541301 NA coding upstream 211666 2193949 ~ 2199535 (+)
LOC113544637 NA coding upstream 226553 2174587 ~ 2184648 (+)
LOC113546173 NA coding upstream 245417 2165623 ~ 2165784 (+)
dctd dctd,cep44,LOC108263714,LOC107550883,LOC107671033,LOC100699771,LOC107684975,LOC102306286 coding upstream 247509 2151929 ~ 2163692 (+)
tmem134 tmem134,LOC107737124 coding upstream 292434 2109068 ~ 2118767 (+)
vegfc vegfc coding downstream 766701 3193301 ~ 3253363 (+)
LOC113543098 tapbp coding downstream 869933 3296533 ~ 3306323 (+)
asb5b asb5,asb5b,LOC107752221,LOC107670925,LOC107737104,LOC107676689 coding downstream 881234 3307834 ~ 3325642 (+)
LOC113541782 NA coding downstream 924285 3350885 ~ 3353178 (+)
LOC117596854 NA coding downstream 929822 3356422 ~ 3358975 (+)
G38895 NA non-coding upstream 98750 2311651 ~ 2312451 (+)
G38826 NA non-coding upstream 245716 2165170 ~ 2165485 (+)
G38812 NA non-coding upstream 284534 2123461 ~ 2126667 (+)
G38796 NA non-coding upstream 354376 2055651 ~ 2056825 (+)
G38761 NA non-coding upstream 444657 1941845 ~ 1966544 (+)
G38962 NA non-coding downstream 1212 2427812 ~ 2431087 (+)
LOC117596855 NA non-coding downstream 974195 3400795 ~ 3403106 (+)
LOC117596918 NA non-coding downstream 1088501 3515101 ~ 3525121 (+)
G40287 NA non-coding downstream 1256743 3683343 ~ 3685205 (+)
G40374 NA non-coding downstream 1438096 3864696 ~ 3865000 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 319858 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 413936 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 1186600 1194219 ~ 1224601 (+)
trmo trmo other upstream 1222607 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 1269267 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 1405267 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2237716 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 2836982 5263582 ~ 5357860 (+)
G41047 NA other downstream 2891934 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 3468831 5895431 ~ 6228685 (+)

Expression


Co-expression Network