Gene
RNA
| Item | Value |
|---|---|
| gene id | G39304 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 902120 ~ 905871 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: AMP deaminase 2-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46549 | True | 262 | lncRNA | 0.43 | 2 | 902120 | 905871 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cxxc4 | cxxc4 | coding | downstream | 30767 | 838511 ~ 871353 (-) |
| cdkn2a/b | LOC108263810 | coding | downstream | 146313 | 746338 ~ 755807 (-) |
| ppa2 | ppa2,LOC108414713 | coding | upstream | 20080 | 925951 ~ 937449 (-) |
| ints12 | ints12 | coding | upstream | 159516 | 1065387 ~ 1069815 (-) |
| anp32b | anp32b | coding | upstream | 240258 | 1146129 ~ 1153350 (-) |
| snapc3 | snapc3 | coding | upstream | 904279 | 1810150 ~ 1820845 (-) |
| si:ch211-113e8.11 | LOC108263804 | coding | upstream | 987715 | 1893586 ~ 1895099 (-) |
| G39293 | NA | non-coding | downstream | 46518 | 854882 ~ 855602 (-) |
| G38494 | LOC108263789 | non-coding | downstream | 157122 | 722152 ~ 744998 (-) |
| G38496 | NA | non-coding | downstream | 173304 | 723474 ~ 728816 (-) |
| G38480 | NA | non-coding | downstream | 193015 | 708051 ~ 709105 (-) |
| G38476 | NA | non-coding | downstream | 195784 | 705979 ~ 706336 (-) |
| G39312 | tet2,LOC108414712 | non-coding | upstream | 15256 | 921127 ~ 925526 (-) |
| G39313 | NA | non-coding | upstream | 48028 | 953899 ~ 954107 (-) |
| G39323 | NA | non-coding | upstream | 87087 | 992958 ~ 993255 (-) |
| G39348 | NA | non-coding | upstream | 140372 | 1046243 ~ 1046753 (-) |
| G39346 | NA | non-coding | upstream | 178568 | 1084439 ~ 1085453 (-) |
| G38400 | NA | other | downstream | 586592 | 314981 ~ 315528 (-) |
| LOC117596825 | LOC108263784,LOC108261164,LOC108261316,LOC108263779 | other | downstream | 634305 | 221729 ~ 267815 (-) |
| LOC113524614 | NA | other | upstream | 98606 | 1004477 ~ 1007050 (-) |
| cntln | cntln,LOC108263774 | other | upstream | 364574 | 1270445 ~ 1369012 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | upstream | 966062 | 1871933 ~ 1877583 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | upstream | 1063892 | 1969763 ~ 1979549 (-) |
| G39720 | NA | other | upstream | 1267487 | 2173358 ~ 2173751 (-) |
