G39312 (tet2,LOC108414712)


Basic Information

Item Value
gene id G39312
gene name tet2,LOC108414712
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 921127 ~ 925526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU46563
acccACATCTCGGCAATATCAGGAATGATATAATAAACAGCTTTCAAATAAACTGCATTCAGTACTTCAGTACATTACAATACTTACAGTATTCATATCCATCCTTAATTTTGAAGCATACCAAACTTTtaggaaacaaagaaacaggacagagacagaaattttaaaaaaattaacccaTTTAgtgtctacatttaaaaaaaaacaaaaaaaaacaccaacacatgCTAGCGTAGCGCGCACTCCGCAAACCAGAAAGTCTGAAAGTCCTTCAAGTAAAGTTGACTCCacgcaaaacaaaacaagtatgTCTTCAAGTATGGCTATGCTTTTCACCCGCTAATCAATCACctaattaacattttatcattttctcatttcattcTTCTCTCCTATTAACCTGCTAATCAGGCTGGATTCTGTAcactaaaaaaatctaatatttatttacaaaactatTCGTTCATCTGCAGAGAAATCGGGTGCTGCAGATTCCTCTTTCAGACTCGGAAAAGGTTCTTCTGTTTGTCCGTCAAGGTTCTATGCAGAACCCTGCAATGAATAGTGTGTTGAGTGAAATATTCAACACACTGTATCGTTACCATGGAGACTACCTCTACATCTCATCCACTCAGGAGTAGGGAGCGTTATATCCTTATATCGTTTATTAACCGTGAAAGCGTAGACCGTTATTGTGATATAAGACCGGGTGTGAGATCTGCGTGACGTTTAACCCTTTCAGCCACGTTTACGTTTCTTAAACCAGGAACACTTTATGAAATACGGGTTTGGTTTTTGAGCTCATTCACATCTCATTTGTATTGCAGATAAAATTAGATAAAATAACAGAATGGGAATTAAAAtaacaatgcaaaaataattgtataCATAGAATAtacagaattactgttaccaaaTTTTCCTAAAACAAACAACGCGTAATGATTGCGATGAAACGTCCAAACACAgcggggtccaaaagtctgagagcccGCGtgaaaatacttttattttgcattattttctaacaaaacgtttcattacaaatgatataaTCAGctacaacttgagtgaaaagtcgaatctttgaaatatttacatgaatttcagagatTCTTAGTATTTACGAACGGGGACGAACCCTTTTTGCTTTAACGACAGTGTGACTCGAGCTGGCACGGACtccattttagatcagatccatcagagtgtcgtccgatctcatgcttcagtagaagagattagacgtgaggaaaatctgaccttctgtacaaagcagttaacctGCTCAATATCACGCAtgtgcttacatttaaatagggagctagaaatagtgcagaatgttaaatattatattcaagatgttgaacatttacttttttgttttaaatttttttttcaagaaatttCTCTTTAtatccagttttaaataaaaaaatcccagcggactcagacttttggacccgaCTGTAAGGCAAGCGTCGTCAAACATTTCAGTGGATCGAACCAAgtgcttgaaaaaaaatgctgataaatgtattttaaaaaaaaaaaatagctgtagTTCAGCGacactcattttaaaaacatgaactaGTGCAGCTTCTGTATCAGATGCTCCGCTGTGGCCAATcgtgtgtatttatgtaaatttattagCTGAACGCAGCTCATCGCACTCTGACTATTActatttttaacatttgtatTTATGATCATTTCCACAGTCTCTGAGAAAACACTTTCTCTCAGGTtgtgttattaaataaattccTTTACAGTTAAATTCTGTATCTGTGGCTGAAAGGGTTAAACCTGCCTGCTGCTACAGGTTACTTAAACCTTTATGAAAAGTAGCTgggtttaaaataaacaataattcaAAAAGCATTTGTGCTTTTTGCATTGAAGACACATTGTACATACAACTCGgttaattttattacagtaaccttgttttttttttcatttaaataaatgatttgaattcataattttctgaaaaataattgAAGTGCTTTCAGAAAATGATTCTTGCCCTGGTCACATTTAACttggagagagggagataaaatgcattaaaataaatgtttagtggttataaataaatttataagcTTTTTACCTATACACATGCACCAAGGATGTGCGTCTGAATTTTTTACTGTgaatttcaggaaaaaaagcGTATTTGACAAAGCCATACTTTCCCTTTAGTCAACTCAGTGCATATTATTGTACTTCTAAAAACAATCCACTAAAACATAAGTacaaaaaattcaaattcagtatttatgtttttttaaaaagttagtttttttgtgtttgaacTATATACAAGGGATTCAAGATGCAAAAATCAATCCCTGAACGAGAGACGACACAGATGATGTGAGAAATTAGCTGAAATATCCctgattttcttatttttatatagaaattTGAAGCTTGAAGTTCAAGTAACACTTTCTAGTAAATCAAGTGTGATGAAAGTAAGTGAGCAAAGTGTTGCGCTGACCTAAAAGTTTGTGAAATTCGTAGTTtcaaatacagaaagaaaaaaaaatgggaaaaagaaagtgaagacACCTTGGTATAGTAATCCTATTGCCAAAAATGTTTTGAGGTATATGACAAATAGGTTCTGTACATCATTCATAAACCTTCTCACCACCCATAGAGATTCTCACATTATACGTTTATAGCAGGTCTATAAGTAGCACCATTTTACGAATAACCCACAAGAAATTTTACTGTACAAATCTCACCTTTTTTATGATACATCTAGATTACAGTTATTAAAGGATCCCCTTTACAGCAAGCCAGCTGCCTTAGAAACTGAAAATGACCAAAAGGTGGCGCTAACCCTGTTCAATAAGGACATGatgaaactgtaaaaaaaaaaaaaaatcccaaacccAAAGTTTCTAAAACTCGTAGCGGACATTTGCGTAGCAGGATTCTTTCGCCAATTCCTGtgctttgtctttaaaaaaattcacgGTTATGAAAATTCATGTTGACAACGGCTCaatgtacagtaaatataaaacacatataGTGGACTGTGAAACCGTAAAAGCACCAGGTGAATATGTTCTtgtcaaatgtaaaaaaataataataataataataattttgcatGATTTTCTTGATTTCCAAAATTGAATGAAACCTTGAAAATAATTACCAGAGGGTGAAAATATCATACCCTCATAATTAAAAGTGCtttaaaaacactaacaaaaaaGTTCCTGTAATTTCTACCAATCTTGAAAGTAATTGCTTAGTACTTGAGAGGTAACGTTctaataaagtattttttaaaccaaaagtgTATCTTAAAAACTCTCTTCACTTAGCACCGTGAACATGATTAGCCACCAAATCAGTGTTTTACACCAGGATTTTACCTTTAGGTtacaaaaactgtaaaattaaagcCATTAAAGATATTTCCAGTAATGGACATCCAGATGTTGTGAAGCACCAGAGTAGAAGAACAGTGCGAGTaacaatgcaataaataaatactttttttaaatgagggTCAACCAGTAAAGCTTAACCTTTTTACCTCTTGTTGATCTATtgtacattttgcatttttcccATAGTGTGGATTTGCCTTAGCTTGCCTCACAGAAGCTTCTACAGGTCTCTGGGTTAATACAGCCAGTGGCACTGAGGTCTGAAAAGCAATATTTTAGCACCATTTCACAATTCCGACACTTTTTTGTTCCCCTGTTTGAGGATGATGTAAACAGATCCCTACAGGAAGTGGCTGTAAGGCCCAGTGACCTTAGTAAAGGCATAGGGAGCTGAGCTGACATAAGTGTTGGTGGTGCAGGACAGTGACTTTTCAGCGAGCATCTGGACAAAACGTTTGTATGGTGGCTCTGAAGGCTCAGAAGGTTCTGGATGTTCTTTCTTGACCCTCTTGCCACCGCTCTTGCTGGGCGTCCCATCTGTGCCGTGCTTCTCGGcatcctcctccttctcccgTGCTTTTTCCGCCATCTTGGCCTCCCATAACGCTAGCCCATGCTTCGCCTCATTCAGGTTCTTGTGCTGGTAGAAAACCAGTGAGATTCGGGTAGGGTGGGTGCGATCGGGCTTCTTGAGTGGCGTGGTTGCATGCAACTCACGCTTTGCACACTCAATGAGAATGGAGCCATGGCTGGGTGCCACTGCTACACCACCAATCTCTGGATCTAGAAAGTTGTGCTCATTGTCTGACCACGCATCCTCCTCCTCTTGAGGTGCAGGCGTTGTGATTCCTTGCTCTTGCTTGACCATAGACGGTTGGATATTTCCATTAGGCAGACTCATACCTGGAGG

Function

symbol description
tet2 Enables methylcytosine dioxygenase activity. Involved in regulation of gene expression. Acts upstream of or within several processes, including cell surface receptor signaling pathway; endothelial to hematopoietic transition; and primitive erythrocyte differentiation. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; eye; hematopoietic system; liver; and pleuroperitoneal region. Used to study myelodysplastic syndrome. Human ortholog(s) of this gene implicated in acute myeloid leukemia; chronic myelomonocytic leukemia; myelodysplastic syndrome; myeloproliferative neoplasm; and primary immunodeficiency disease. Orthologous to human TET2 (tet methylcytosine dioxygenase 2).

NR:

description
PREDICTED: methylcytosine dioxygenase TET2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46563 True 4341 lncRNA 0.36 2 921127 925526

Neighbor

gene id symbol gene type direction distance location
cxxc4 cxxc4 coding downstream 49774 838511 ~ 871353 (-)
cdkn2a/b LOC108263810 coding downstream 165320 746338 ~ 755807 (-)
ppa2 ppa2,LOC108414713 coding upstream 425 925951 ~ 937449 (-)
ints12 ints12 coding upstream 139861 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 220603 1146129 ~ 1153350 (-)
snapc3 snapc3 coding upstream 884624 1810150 ~ 1820845 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 968060 1893586 ~ 1895099 (-)
G39306 NA non-coding downstream 13293 903998 ~ 907834 (-)
G39303 NA non-coding downstream 13719 901948 ~ 907408 (-)
G39304 NA non-coding downstream 15256 902120 ~ 905871 (-)
G39293 NA non-coding downstream 65525 854882 ~ 855602 (-)
G38494 LOC108263789 non-coding downstream 176129 722152 ~ 744998 (-)
G39313 NA non-coding upstream 28373 953899 ~ 954107 (-)
G39323 NA non-coding upstream 67432 992958 ~ 993255 (-)
G39348 NA non-coding upstream 120717 1046243 ~ 1046753 (-)
G39346 NA non-coding upstream 158913 1084439 ~ 1085453 (-)
G39359 NA non-coding upstream 225620 1151146 ~ 1194477 (-)
G38400 NA other downstream 605599 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 653312 221729 ~ 267815 (-)
LOC113524614 NA other upstream 78951 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 344919 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 946407 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1044237 1969763 ~ 1979549 (-)
G39720 NA other upstream 1247832 2173358 ~ 2173751 (-)

Expression


Co-expression Network