G39356


Basic Information

Item Value
gene id G39356
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1162650 ~ 1165350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU46633
ttttatttaaaatgattcattttgcaAAAAGTCTGAAGAAAACGACATCACAATGTAATagtcatattaataaatatacatttgttCCTGATTCAAATTACACATAGGTTGCGAACACTCTGATGAGTTATTGGTCCCTTTTTTTTGGTCTAATTTCTCATATACAcacttgaaattaaaaaaaaaaaaaaacaataaaaagttaACCAGTGAAATACAATGTGATTGTGGTAATGCTATAATATCTGGGACTGGTCAGGGATCAGTTAGATAAGGTTTCCAGGTATCGAGTCAGGCGACGCTAACACTGTATCTGAGAACGCTTTACTCTGTTCAGCGGCGTCGATGGCTGACGGCTCCGCAACACCACCTGCAACGAGACAAAGTGCATGTTTTTCATATGTATCTTTAAAAAGAATTGGGATCAATATAATGTAAAGCAATTGCTGATGGCTAAGAGTACTAACAGCCCACTGAAACATTTACGTTTCTTCACAGACACCTTGATCTGACTGAAGATGTCCAGTTCCACCTCAGAGCTGAACTTCTGAGGGTTGAAACCTATAAACCTGGCTCGAACACATTTAATAAGAAGCTAAAGCGTAGTGGATTTATAAGAACGGGTGCTGTTTAAGACCTTGATCGATTACAAGTTTGTCTTGAGGCACTGCTTTGGCTTTGTCATCTTGCTCATCAGGGCCGAGATCTTCAATCAGAACCTCCTGAAGAAGAGCTTCACTGCTGGGCTTCACCTCTGGAGTCACATCAGGAGCAGGAAGAGGGATAGGGACGGAAAGCGCAGCAGGAAGATCCAGAGCAGGAGCTGACGCTTGGGCAGGAATGGCGGCAGAATCCAGCGTGGAAACGGGAGCAGGATGTGGAGCGGTAACCACCTCCTCCGCTTGGCCGGGTGAATCTTCAACTTCTGTCGATTCAAGCTGTTGTTCCTTCACAGGGACGTTCTTTCTTGGTCTGCCTTTCTTCTTCGGAAcattgtttgtctctctcttcgCTCGTTTGCTGCTCTGAGCTCTGCAGGGTTTCAAAAAAGAGATCTCATTGGAGTTCACTTGACTAAAACATGAAGAAGTATTCATGCTGTGTACAATATGCAGAGCAAAACACTTACAGCTGGGTGCAAAAGTcaaatagtttattttattagccAATCAAAACATTGTGTACTGCTAATCAGAATActatactgctctcagccaatgagaacacactgtactgctctcagccaatcagaacacaccgtactgctctcagccaatcagaacacaccgtactgctctcagccaatcagaacacaccgtactgctctcagccaatgaGAACACATTGTGCTGTTAATCAGAATActatactgctctcagccaatgaGAACATACCATGCTGCtcgcagccaatcagagcacactgtactGATCTTAGCCAATGAGAacacaatgtactgctctcagccaatgaGAACACattgtactgctctcagccaatcagaacacattgtactgctctcagccaatcagaacacattgtactgctctcagccaatcagaacacaccgtactgctctctgGATTTTTGACTTGATTGCggtgtttatgtaaaataatgcaCATTTGCCAAATCAGCTAAAAAAGCTGTAAAAGTTCTTTGCACATCCTGATTTTCTAGTTTTCTAGTTTTCTGTGCGAATCACGTGACTTTAAAGCAGCAGatgaaataagaataaaatggGTGAGACATGCTGAGTGTGTGACGTTTGCAGTGGCGCTACGATGCTAATGAACCCACGCTACACTGCACAGGCACTAAATTTACCCATAAACCCACTGGTTAGTTGCTCGCTCTTCCGCTTCGGCTTTCCTCTTCCTCAGCAGATCTCGATCCCGGAGCCGCCGTCCAGTCCCTCCTGGAAAAATATCCCACATTCCTTTGGTTTGCTGCTCGATCATGtgtgttgaGAGATGATTCTGTTACAGAAACGACTGCAGTTAGTAAGCATTAACAGAACACAAACACCAGGAGCTCTTTCACAACATCAAACAGAAGTGACAGCGACAGGGTCATTTACTGCCGTTAATAAAAAGAAACCAGGAGGAAGATCCTCACAATTGCTTGAATGTGCTGCGTCCACTTttaaaaagaggctggtgattGAAGTGAAATTCCTACCTTGGTCATCATCAGGGACTTTCACTTCGACAGGAACTTTCTCCTCCAGCGTCTCCTCCATTTTGTCGCTCGATCAAACGCATAAAGTGCAAGTGGAAGACGGGCGGGTGAAGAAAAGCGCTGTGGCTCCTGCCCCTGAGAGAAGAGTTATCAGGCTAAAC
>TU46634
ttttatttaaaatgattcattttgcaAAAAGTCTGAAGAAAACGACATCACAATGTAATagtcatattaataaatatacatttgttCCTGATTCAAATTACACATAGGTTGCGAACACTCTGATGAGTTATTGGTCCCTTTTTTTTGGTCTAATTTCTCATATACAcacttgaaattaaaaaaaaaaaaaaacaataaaaagttaACCAGTGAAATACAATGTGATTGTGGTAATGCTATAATATCTGGGACTGGTCAGGGATCAGTTAGATAAGGTTTCCAGGTATCGAGTCAGGCGACGCTAACACTGTATCTGAGAACGCTTTACTCTGTTCAGCGGCGTCGATGGCTGACGGCTCCGCAACACCACCTGCAACGAGACAAAGTGCATGTTTTTCATATGTATCTTTAAAAAGAATTGGGATCAATATAATGTAAAGCAATTGCTGATGGCTAAGAGTACTAACAGCCCACTGAAACATTTACGTTTCTTCACAGACACCTTGATCTGACTGAAGATGTCCAGTTCCACCTCAGAGCTGAACTTCTGAGGGTTGAAACCTATAAACCTGGCTCGAACACATTTAATAAGAAGCTAAAGCGTAGTGGATTTATAAGAACGGGTGCTGTTTAAGACCTTGATCGATTACAAGTTTGTCTTGAGGCACTGCTTTGGCTTTGTCATCTTGCTCATCAGGGCCGAGATCTTCAATCAGAACCTCCTGAAGAAGAGCTTCACTGCTGGGCTTCACCTCTGGAGTCACATCAGGAGCAGGAAGAGGGATAGGGACGGAAAGCGCAGCAGGAAGATCCAGAGCAGGAGCTGACGCTTGGGCAGGAATGGCGGCAGAATCCAGCGTGGAAACGGGAGCAGGATGTGGAGCGGTAACCACCTCCTCCGCTTGGCCGGGTGAATCTTCAACTTCTGTCGATTCAAGCTGTTGTTCCTTCACAGGGACGTTCTTTCTTGGTCTGCCTTTCTTCTTCGGAAcattgtttgtctctctcttcgCTCGTTTGCTGCTCTGAGCTCTGCAGGGTTTCAAAAAAGAGATCTCATTGGAGTTCACTTGACTAAAACATGAAGAAGTATTCATGCTGTGTACAATATGCAGAGCAAAACACTTACAGCTGGGTGCAAAAGTcaaatagtttattttattagccAATCAAAACATTGTGTACTGCTAATCAGAATActatactgctctcagccaatgagaacacactgtactgctctcagccaatcagaacacaccgtactgctctcagccaatcagaacacaccgtactgctctcagccaatcagaacacaccgtactgctctcagccaatgaGAACACATTGTGCTGTTAATCAGAATActatactgctctcagccaatgaGAACATACCATGCTGCtcgcagccaatcagagcacactgtactGATCTTAGCCAATGAGAacacaatgtactgctctcagccaatgaGAACACattgtactgctctcagccaatcagaacacattgtactgctctcagccaatcagaacacattgtactgctctcagccaatcagaacacaccgtactgctctctgGATTTTTGACTTGATTGCggtgtttatgtaaaataatgcaCATTTGCCAAATCAGCTAAAAAAGCTGTAAAAGTTCTTTGCACATCCTGATTTTCTAGTTTTCTAGTTTTCTGTGCGAATCACGTGACTTTAAAGCAGCAGatgaaataagaataaaatggGTGAGACATGCTGAGTGTGTGACGTTTGCAGTGGCGCTACGATGCTAATGAACCCACGCTACACTGCACAGGCACTAAATTTACCCATAAACCCACTGGTTAGTTGCTCGCTCTTCCGCTTCGGCTTTCCTCTTCCTCAGCAGATCTCGATCCCGGAGCCGCCGTCCAGTCCCTCCTGGAAAAATATCCCACATTCCTTTGGTTTGCTGCTCGATCATGGTAACAGATTCACTAATGAATTCAATATTAGCAAAGAAAAGCAGATCTCTAGCATGAGAATTAATAAGCTAATTAGCAGTTAGCATAAAATTGGCACTACATTAACTGTAAAGCCTGACAGAGGACTTGGTTATTTATCACATCTGTGTGTTCTAGCATTTAGGACAGAGccttaaaatggctgactttCTAATAAATGCATTAAGTAGGTGTAAAATTTAGCGTTTGATGAGCAGCTTGAAGATTAGCGCTTATAATGAGAGTCAGTCAGGGCAGGTTGCAGATTTTAtacaacaatattaaaaaaaatgtaatgtttttgtgtgaaagtgtgttgaGAGATGATTCTGTTACAGAAACGACTGCAGTTAGTAAGCATTAACAGAACACAAACACCAGGAGCTCTTTCACAACATCAAACAGAAGTGACAGCGACAGGGTCATTTACTGCCGTTAATAAAAAGAAACCAGGAGGAAGATCCTCACAATTGCTTGAATGTGCTGCGTCCACTTttaaaaagaggctggtgattGAAGTGAAATTCCTACCTTGGTCATCATCAGGGACTTTCACTTCGACAGGAACTTTCTCCTCCAGCGTCTCCTCCATTTTGTCGCTCGATCAAACGCATAAAGTGCAAGTGGAAGACGGGCGGGTGAAGAAAAGCGCTGTGGCTCCTGCCCCTGAGAGAAGAGTTATCAGGCTAAAC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46633 False 2342 lncRNA 0.44 3 1162650 1165350
TU46634 True 2672 lncRNA 0.42 2 1162650 1165350

Neighbor

gene id symbol gene type direction distance location
anp32b anp32b coding downstream 9300 1146129 ~ 1153350 (-)
ints12 ints12 coding downstream 92835 1065387 ~ 1069815 (-)
ppa2 ppa2,LOC108414713 coding downstream 225201 925951 ~ 937449 (-)
cxxc4 cxxc4 coding downstream 291297 838511 ~ 871353 (-)
cdkn2a/b LOC108263810 coding downstream 406843 746338 ~ 755807 (-)
snapc3 snapc3 coding upstream 644800 1810150 ~ 1820845 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 728236 1893586 ~ 1895099 (-)
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding upstream 782025 1947375 ~ 1964907 (-)
aip aip,LOC106609959 coding upstream 836099 2001449 ~ 2007253 (-)
sod3b sod3 coding upstream 842559 2007909 ~ 2011692 (-)
G39346 NA non-coding downstream 77197 1084439 ~ 1085453 (-)
G39348 NA non-coding downstream 115897 1046243 ~ 1046753 (-)
G39323 NA non-coding downstream 169395 992958 ~ 993255 (-)
G39313 NA non-coding downstream 208543 953899 ~ 954107 (-)
G39312 tet2,LOC108414712 non-coding downstream 237124 921127 ~ 925526 (-)
G39390 trmo non-coding upstream 5553 1170903 ~ 1171514 (-)
G39412 NA non-coding upstream 51937 1217287 ~ 1634965 (-)
G39413 NA non-coding upstream 52151 1217501 ~ 1293597 (-)
G39411 NA non-coding upstream 127430 1292780 ~ 1294451 (-)
G39476 NA non-coding upstream 314129 1479479 ~ 1479890 (-)
LOC113524614 NA other downstream 155600 1004477 ~ 1007050 (-)
G38400 NA other downstream 847122 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 894835 221729 ~ 267815 (-)
cntln cntln,LOC108263774 other upstream 105095 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 706583 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 804413 1969763 ~ 1979549 (-)
G39720 NA other upstream 1008008 2173358 ~ 2173751 (-)
tenm3 tenm3,LOC108434131 other upstream 1054797 2220147 ~ 2984203 (-)

Expression


Co-expression Network