Gene
RNA
| Item | Value |
|---|---|
| gene id | G39390 |
| gene name | trmo |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1170903 ~ 1171514 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| trmo | Predicted to enable tRNA (adenine-N6-)-methyltransferase activity. Orthologous to human TRMO (tRNA methyltransferase O). |
| description |
|---|
| PREDICTED: tRNA (adenine(37)-N6)-methyltransferase isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46670 | True | 589 | lncRNA | 0.44 | 2 | 1170903 | 1171514 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| anp32b | anp32b | coding | downstream | 17553 | 1146129 ~ 1153350 (-) |
| ints12 | ints12 | coding | downstream | 101088 | 1065387 ~ 1069815 (-) |
| ppa2 | ppa2,LOC108414713 | coding | downstream | 233454 | 925951 ~ 937449 (-) |
| cxxc4 | cxxc4 | coding | downstream | 299550 | 838511 ~ 871353 (-) |
| cdkn2a/b | LOC108263810 | coding | downstream | 415096 | 746338 ~ 755807 (-) |
| snapc3 | snapc3 | coding | upstream | 638636 | 1810150 ~ 1820845 (-) |
| si:ch211-113e8.11 | LOC108263804 | coding | upstream | 722072 | 1893586 ~ 1895099 (-) |
| ccdc149b | ccdc149b,LOC108263252,LOC107550975,LOC105908379 | coding | upstream | 775861 | 1947375 ~ 1964907 (-) |
| aip | aip,LOC106609959 | coding | upstream | 829935 | 2001449 ~ 2007253 (-) |
| sod3b | sod3 | coding | upstream | 836395 | 2007909 ~ 2011692 (-) |
| G39356 | NA | non-coding | downstream | 5553 | 1162650 ~ 1165350 (-) |
| G39346 | NA | non-coding | downstream | 85450 | 1084439 ~ 1085453 (-) |
| G39348 | NA | non-coding | downstream | 124150 | 1046243 ~ 1046753 (-) |
| G39323 | NA | non-coding | downstream | 177648 | 992958 ~ 993255 (-) |
| G39313 | NA | non-coding | downstream | 216796 | 953899 ~ 954107 (-) |
| G39412 | NA | non-coding | upstream | 45773 | 1217287 ~ 1634965 (-) |
| G39413 | NA | non-coding | upstream | 45987 | 1217501 ~ 1293597 (-) |
| G39411 | NA | non-coding | upstream | 121266 | 1292780 ~ 1294451 (-) |
| G39476 | NA | non-coding | upstream | 307965 | 1479479 ~ 1479890 (-) |
| G39483 | NA | non-coding | upstream | 319171 | 1490685 ~ 1493920 (-) |
| LOC113524614 | NA | other | downstream | 163853 | 1004477 ~ 1007050 (-) |
| G38400 | NA | other | downstream | 855375 | 314981 ~ 315528 (-) |
| LOC117596825 | LOC108263784,LOC108261164,LOC108261316,LOC108263779 | other | downstream | 903088 | 221729 ~ 267815 (-) |
| cntln | cntln,LOC108263774 | other | upstream | 98931 | 1270445 ~ 1369012 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | upstream | 700419 | 1871933 ~ 1877583 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | upstream | 798249 | 1969763 ~ 1979549 (-) |
| G39720 | NA | other | upstream | 1001844 | 2173358 ~ 2173751 (-) |
| tenm3 | tenm3,LOC108434131 | other | upstream | 1048633 | 2220147 ~ 2984203 (-) |
