G39484


Basic Information

Item Value
gene id G39484
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1494621 ~ 1496066 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU46782
GTTAGGGTTTGGTGGAGAAGATTGAGGTTTGGTGGACAAGGTTAGGGTTTGGTGGAGAAGATTGCGGTTTGGTGGACAAGGTTAGGGTTTGGTGGAGAAGATTGAGGTTTGGTGGACAACATTAGGGTTTGGTGGAGAAGAAGAATTTAAACTAACACTTTTCACCTGTAAAGATTCTGCAGTATAATTTATGAGATGCTAATGGCATTATTAgtgacctaaaaaaaaataaagatttacaaATAACTTTGTTAAAGAAGCATGACAAAATGTTGTTTATAGCGTAACACTACAACATTACTGATGTGCAGTCAGCttcagaaatattggcaccctcagtaaaaatgggtttaaaaaaGGGGGGTCATTACAAAGTCTTTGCTGttaatgagagaaataaaacctaTAATTAAAGTCATTTCAtgctaagaaaaaaattacactgtcaacaatatattttattcatatttaaaaaaaacatgtgtcaCAATTATTGCACCCAGCATTTAGTAAAGTGTTGTGCAACCTCACTGTGCCAATATAAACGTCTTTAATAAAGCTTAATGAGATCAGATAATACAAAGCAACAATTCTGAGACCACTTTaagagggtgccaataattatggagcaGACAGTAACTAGTTCAGATTGTTACCTTGGTATAAGGTCAAGTCGATAATGTATATTGTCGCTCATTTTATCAAGAACGAGTCTCCAGTGCAGTAGAGCGATATGAAAAATCAGACATGTGAATTATCTTATTAATCACAGCGTGTTAAGTATTTCTATAAACAATGATATTGTCAtttctatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttggctAATGCTAAGTAAATATATGAGACGTACGCAGCGTATGAGGTCAATAGACACAGGAGAAGCTGTCTCATTAAGCACGTCAGAGCCACAGAGCGGACGTTCCTGACTTCATTCATTCGTTTCGCTCCCTAATTGCGAACTTAATTTTCCGActccattgattttttttctcttttttttgcctccTCTCCGTCTGTTCATTTTCCTAATGAAACGCTTCAGAGCAATTTGGTGCCAAGTAAGTAAATggagctttaatttgaggggtGGCTGCAGGAAGCAGATCTTTCAGCCCCGTGTCCTTCCGCACATTGTGAatgcttaacacacacacacacacatacacacacgccacatgcacacacaccctgttgtCATGGTATACACCACTCTGGTGTAGGTGTTTAGTATAGAAGAAGACTGTAGTTTGTTTGAGAACACAACATTGGTGTTTCGTGGAGAAGATTGTGGTTTGTTGGAAACATcagtgtttggtggtgaatgatGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46782 True 1366 lncRNA 0.38 3 1494621 1496066

Neighbor

gene id symbol gene type direction distance location
anp32b anp32b coding downstream 341271 1146129 ~ 1153350 (-)
ints12 ints12 coding downstream 424806 1065387 ~ 1069815 (-)
ppa2 ppa2,LOC108414713 coding downstream 557172 925951 ~ 937449 (-)
cxxc4 cxxc4 coding downstream 623268 838511 ~ 871353 (-)
cdkn2a/b LOC108263810 coding downstream 738814 746338 ~ 755807 (-)
snapc3 snapc3 coding upstream 314084 1810150 ~ 1820845 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 397520 1893586 ~ 1895099 (-)
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding upstream 451309 1947375 ~ 1964907 (-)
aip aip,LOC106609959 coding upstream 505383 2001449 ~ 2007253 (-)
sod3b sod3 coding upstream 511843 2007909 ~ 2011692 (-)
G39483 NA non-coding downstream 701 1490685 ~ 1493920 (-)
G39476 NA non-coding downstream 14731 1479479 ~ 1479890 (-)
G39411 NA non-coding downstream 200170 1292780 ~ 1294451 (-)
G39413 NA non-coding downstream 201024 1217501 ~ 1293597 (-)
G39359 NA non-coding downstream 300144 1151146 ~ 1194477 (-)
G39521 NA non-coding upstream 59662 1555728 ~ 1556545 (-)
G39533 NA non-coding upstream 87922 1583988 ~ 1679803 (-)
LOC117596905 NA non-coding upstream 190663 1686729 ~ 1690994 (-)
G39570 NA non-coding upstream 327782 1823848 ~ 1824596 (-)
G39589 NA non-coding upstream 348699 1844765 ~ 1846362 (-)
cntln cntln,LOC108263774 other downstream 125609 1270445 ~ 1369012 (-)
LOC113524614 NA other downstream 487571 1004477 ~ 1007050 (-)
G38400 NA other downstream 1179093 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 1226806 221729 ~ 267815 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 375867 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 473697 1969763 ~ 1979549 (-)
G39720 NA other upstream 677292 2173358 ~ 2173751 (-)
tenm3 tenm3,LOC108434131 other upstream 724081 2220147 ~ 2984203 (-)
trnae-uuc NA other upstream 1536666 3032732 ~ 3032803 (-)

Expression


Co-expression Network