Gene
RNA
| Item | Value |
|---|---|
| gene id | G39521 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1555728 ~ 1556545 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46824 | True | 537 | lncRNA | 0.35 | 2 | 1555728 | 1556545 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| anp32b | anp32b | coding | downstream | 402378 | 1146129 ~ 1153350 (-) |
| ints12 | ints12 | coding | downstream | 485913 | 1065387 ~ 1069815 (-) |
| ppa2 | ppa2,LOC108414713 | coding | downstream | 618279 | 925951 ~ 937449 (-) |
| cxxc4 | cxxc4 | coding | downstream | 684375 | 838511 ~ 871353 (-) |
| cdkn2a/b | LOC108263810 | coding | downstream | 799921 | 746338 ~ 755807 (-) |
| snapc3 | snapc3 | coding | upstream | 253605 | 1810150 ~ 1820845 (-) |
| si:ch211-113e8.11 | LOC108263804 | coding | upstream | 337041 | 1893586 ~ 1895099 (-) |
| ccdc149b | ccdc149b,LOC108263252,LOC107550975,LOC105908379 | coding | upstream | 390830 | 1947375 ~ 1964907 (-) |
| aip | aip,LOC106609959 | coding | upstream | 444904 | 2001449 ~ 2007253 (-) |
| sod3b | sod3 | coding | upstream | 451364 | 2007909 ~ 2011692 (-) |
| G39484 | NA | non-coding | downstream | 59662 | 1494621 ~ 1496066 (-) |
| G39483 | NA | non-coding | downstream | 61808 | 1490685 ~ 1493920 (-) |
| G39476 | NA | non-coding | downstream | 75838 | 1479479 ~ 1479890 (-) |
| G39411 | NA | non-coding | downstream | 261277 | 1292780 ~ 1294451 (-) |
| G39413 | NA | non-coding | downstream | 262131 | 1217501 ~ 1293597 (-) |
| G39533 | NA | non-coding | upstream | 27443 | 1583988 ~ 1679803 (-) |
| LOC117596905 | NA | non-coding | upstream | 130184 | 1686729 ~ 1690994 (-) |
| G39570 | NA | non-coding | upstream | 267303 | 1823848 ~ 1824596 (-) |
| G39589 | NA | non-coding | upstream | 288220 | 1844765 ~ 1846362 (-) |
| G39596 | NA | non-coding | upstream | 295468 | 1852013 ~ 1853638 (-) |
| cntln | cntln,LOC108263774 | other | downstream | 186716 | 1270445 ~ 1369012 (-) |
| LOC113524614 | NA | other | downstream | 548678 | 1004477 ~ 1007050 (-) |
| G38400 | NA | other | downstream | 1240200 | 314981 ~ 315528 (-) |
| LOC117596825 | LOC108263784,LOC108261164,LOC108261316,LOC108263779 | other | downstream | 1287913 | 221729 ~ 267815 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | upstream | 315388 | 1871933 ~ 1877583 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | upstream | 413218 | 1969763 ~ 1979549 (-) |
| G39720 | NA | other | upstream | 616813 | 2173358 ~ 2173751 (-) |
| tenm3 | tenm3,LOC108434131 | other | upstream | 663602 | 2220147 ~ 2984203 (-) |
| trnae-uuc | NA | other | upstream | 1476187 | 3032732 ~ 3032803 (-) |
