Gene
RNA
| Item | Value |
|---|---|
| gene id | G39627 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1961768 ~ 2012888 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46978 | True | 252 | lncRNA | 0.49 | 2 | 1961768 | 2012888 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-113e8.11 | LOC108263804 | coding | downstream | 66669 | 1893586 ~ 1895099 (-) |
| snapc3 | snapc3 | coding | downstream | 140923 | 1810150 ~ 1820845 (-) |
| anp32b | anp32b | coding | downstream | 808418 | 1146129 ~ 1153350 (-) |
| ints12 | ints12 | coding | downstream | 891953 | 1065387 ~ 1069815 (-) |
| ppa2 | ppa2,LOC108414713 | coding | downstream | 1024319 | 925951 ~ 937449 (-) |
| irf2a | LOC108263359,LOC108434128 | coding | upstream | 113930 | 2126818 ~ 2143166 (-) |
| spcs3 | spcs3,LOC106602378 | coding | upstream | 1275842 | 3288730 ~ 3293879 (-) |
| wdr17 | wdr17 | coding | upstream | 1319080 | 3331968 ~ 3433129 (-) |
| cep44 | cep44 | coding | upstream | 1670555 | 3683443 ~ 3699520 (-) |
| galnt7 | galnt7 | coding | upstream | 1830591 | 3843479 ~ 3869764 (-) |
| G39624 | LOC108263251,LOC108434122,LOC107559642,LOC107737095,LOC107674247 | non-coding | downstream | 20020 | 1938680 ~ 1941748 (-) |
| G39596 | NA | non-coding | downstream | 108130 | 1852013 ~ 1853638 (-) |
| G39589 | NA | non-coding | downstream | 115406 | 1844765 ~ 1846362 (-) |
| G39570 | NA | non-coding | downstream | 137172 | 1823848 ~ 1824596 (-) |
| LOC117596905 | NA | non-coding | downstream | 270774 | 1686729 ~ 1690994 (-) |
| G39662 | NA | non-coding | upstream | 32227 | 2045115 ~ 2091336 (-) |
| G39672 | NA | non-coding | upstream | 46866 | 2059754 ~ 2060427 (-) |
| G39696 | NA | non-coding | upstream | 80204 | 2093092 ~ 2093298 (-) |
| G39699 | tmem134 | non-coding | upstream | 96222 | 2109110 ~ 2113534 (-) |
| G39705 | NA | non-coding | upstream | 111087 | 2123975 ~ 2126647 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | downstream | 84185 | 1871933 ~ 1877583 (-) |
| cntln | cntln,LOC108263774 | other | downstream | 592756 | 1270445 ~ 1369012 (-) |
| LOC113524614 | NA | other | downstream | 954718 | 1004477 ~ 1007050 (-) |
| G38400 | NA | other | downstream | 1646240 | 314981 ~ 315528 (-) |
| LOC117596825 | LOC108263784,LOC108261164,LOC108261316,LOC108263779 | other | downstream | 1693953 | 221729 ~ 267815 (-) |
| G39720 | NA | other | upstream | 160470 | 2173358 ~ 2173751 (-) |
| tenm3 | tenm3,LOC108434131 | other | upstream | 207259 | 2220147 ~ 2984203 (-) |
| trnae-uuc | NA | other | upstream | 1019844 | 3032732 ~ 3032803 (-) |
| trnah-gug_2 | NA | other | upstream | 1020978 | 3033866 ~ 3033937 (-) |
| trnah-gug_3 | NA | other | upstream | 1021594 | 3034482 ~ 3034553 (-) |
