G39646


Basic Information

Item Value
gene id G39646
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1987462 ~ 1997288 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU46998
AGCAGAAACAAACGTTTTTGAAGTTTAATTGAAAAACCGGATTTTTATTGgagtttttttgcatttaaatacagaactgcaaaaagtttgaaatTACAAAAGTAATTATGTGGAACAGaggtgtgtaaaagtgtgtgagagagagaataagagagagagagagatatacagagaggtgtgggtgtgtgttatgtgCGAGCGCTGCGCTCGGTTTCAGCTAGACACTCTCTCACTAGAGCTCGGGCGTGGATGATTCCTGAAACGCAAACAAAAAGAGAGGCATTACacactttcttctctctctctgtcgtaTGAttgagggtgccaatatttttgggTTGCATTTCTGGTCCTGAAATGAAGTCTGTCTGAGTCGGAACGTAGGATAACGAGGACACATCACATAAAGTTAATCCTATAATTCTGCTCACCTGACAACAGTGAACATAAAGCGTATCCTGTGCTACGCTTTACTACACTACAGCGCACTATACTATATTTACACGTACTACAGTATACCGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTatagctggtgagggaatgactgtttacagctgctataacataagtgagaacaggaagtaacatgtTTAAGTGTAAGTCTAAACGGATAAAAATCTATGACGTGTCGTTCTTAAATAGATGAAAATGATTGGTAATTGTTGGTaggtggtataagaggaataaagcacttgcggatgtgttgttataggacgTAACTCCGCTTCTTTACACCAATCCGTCACTCAGGGTTTTACGATAAGAGCAtgacaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgttactgtagtacCTCTCTTCAGTCTCTCCATGGCGCTTTTACTGCCGGCGTACGTGGGTCTGATTTCTCGACTCATCTCCTCTATCACAGACAGCAGCTCGCTGTAGGTGGAGCCCTGAGACACTTTCACTGGCTGAGAttcaaaaacaacaataaaataaaattcagaaaaGTTTTCCATTAAATTTCAGCTGCTTAATAAAActctaaaatttatttttagagaCTAAAT
>TU47000
AGCAGAAACAAACGTTTTTGAAGTTTAATTGAAAAACCGGATTTTTATTGgagtttttttgcatttaaatacagaactgcaaaaagtttgaaatTACAAAAGTAATTATGTGGAACAGaggtgtgtaaaagtgtgtgagagagagaataagagagagagagagatatacagagaggtgtgggtgtgtgttatgtgCGAGCGCTGCGCTCGGTTTCAGCTAGACACTCTCTCACTAGAGCTCGGGCGTGGATGATTCCTGAAACGCAAACAAAAAGAGAGGCATTACacactttcttctctctctctgtcgtaTGAttgagggtgccaatatttttgggTTGCATTTCTGGTCCTGAAATGAAGTCTGTCTGAGTCGGAACGTAGGATAACGAGGACACATCACATAAAGTTAATCCTATAATTCTGCTCACCTGACAACAGTGAACATAAAGCGTATCCTGTGCTACGCTTTACTACACTACAGCGCACTATACTATATTTACACGTACTACAGTATACCGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTatagctggtgagggaatgactgtttacagctgctataacataagtgagaacaggaagtaacatgtTTAAGTGTAAGTCTAAACGGATAAAAATCTATGACGTGTCGTTCTTAAATAGATGAAAATGATTGGTAATTGTTGGTaggtggtataagaggaataaagcacttgcggatgtgttgttataggacgTAACTCCGCTTCTTTACACCAATCCGTCACTCAGGGTTTTACGATAAGAGCAtgacaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgttactgtagtacCTCTCTTCAGTCTCTCCATGGCGCTTTTACTGCCGGCGTACGTGGGTCTGATTTCTCGACTCATCTCCTCTATCACAGACAGCAGCTCGCTGTAGGTGGAGCCCTGAGACACTTTCACTGGCTGAGAttcaaaaacaacaataaaataaaattcagaaaaGTTTTCCATTAAATTTCAGCTGCTTAATAAAActctaaaatttatttttagagaCTAAAT
>TU47001
GCCACGCTTTACTACACTACAGCGCACTATACCGCCATACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTatagctggtgagggaatgactgtttacagctgctataacataagtgagaacaggaagtaacatgtTTAAGTGTAAGTCTAAACGGATAAAAATCTATGACGTGTCGTTCTTAAATAGATGAAAATGATTGGTAATTGTTGGTaggtggtataagaggaataaagcacttgcggatgtgttgttataggacgTAACTCCGCTTCTTTACACCAATCCGTCACTCAGGGTTTTACGATAAGAGCAtgacaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgttactgtagtacCTCTCTTCAGTCTCTCCATGGCGCTTTTACTGCCGGCGTACGTGGGTCTGATTTCTCGACTCATCTCCTCTATCACAGACAGCAGCTCGCTGTAGGTGGAGCCCTGAGACACTTTCACTGGCTGAGAttcaaaaacaacaataaaataaaattcagaaaaGTTTTCCATTAAATTTCAGCTGCTTAATAAAActctaaaatttatttttagagaCTAAAT
>TU47004
AGCAGAAACAAACGTTTTTGAAGTTTAATTGAAAAACCGGATTTTTATTGgagtttttttgcatttaaatacagaactgcaaaaagtttgaaatTACAAAAGTAATTATGTGGAACAGaggtgtgtaaaagtgtgtgagagagagaataagagagagagagagatatacagagaggtgtgggtgtgtgttatgtgCGAGCGCTGCGCTCGGTTTCAGCTAGACACTCTCTCACTAGAGCTCGGGCGTGGATGATTCCTGAAACGCAAACAAAAAGAGAGGCATTACacactttcttctctctctctgtcgtaTGAttgagggtgccaatatttttgggTTGCATTTCTGGTCCTGAAATGAAGTCTGTCTGAGTCGGAACGTAGGATAACGAGGACACATCACATAAAGTTAATCCTATAATTCTGCTCACCTGACAACAGTGAACATAAAGCGTATCCTGTGCTACGCTTTACTACACTACAGCGCACTATACTATATTTACACGTACTACAGTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCACTACACTATATTTACACGTACTACAGTATACTGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTatagctggtgagggaatgactgtttacagctgctataacataagtgagaacaggaagtaacatgtTTAAGTGTAAGTCTAAACGGATAAAAATCTATGACGTGTCGTTCTTAAATAGATGAAAATGATTGGTAATTGTTGGTaggtggtataagaggaataaagcacttgcggatgtgttgttataggacgTAACTCCGCTTCTTTACACCAATCCGTCACTCAGGGTTTTACGATAAGAGCAtgacaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgttactgtagtacCTCTCTTCAGTCTCTCCATGGCGCTTTTACTGCCGGCGTACGTGGGTCTGATTTCTCGACTCATCTCCTCTATCACAGACAGCAGCTCGCTGTAGGTGGAGCCCTGAGACACTTTCACTGGCTGAGAttcaaaaacaacaataaaataaaattcagaaaaGTTTTCCATTAAATTTCAGCTGCTTAATAAAActctaaaatttatttttagagaCTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46998 False 1578 lncRNA 0.42 3 1987462 1997288
TU47000 False 1403 lncRNA 0.32 3 1987462 1997288
TU47001 False 1021 lncRNA 0.43 3 1987462 1988694
TU47004 True 1718 lncRNA 0.42 5 1987462 1997288

Neighbor

gene id symbol gene type direction distance location
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding downstream 22555 1947375 ~ 1964907 (-)
si:ch211-113e8.11 LOC108263804 coding downstream 92363 1893586 ~ 1895099 (-)
snapc3 snapc3 coding downstream 166617 1810150 ~ 1820845 (-)
anp32b anp32b coding downstream 834112 1146129 ~ 1153350 (-)
ints12 ints12 coding downstream 917647 1065387 ~ 1069815 (-)
aip aip,LOC106609959 coding upstream 4161 2001449 ~ 2007253 (-)
sod3b sod3 coding upstream 10621 2007909 ~ 2011692 (-)
irf2a LOC108263359,LOC108434128 coding upstream 129530 2126818 ~ 2143166 (-)
spcs3 spcs3,LOC106602378 coding upstream 1291442 3288730 ~ 3293879 (-)
wdr17 wdr17 coding upstream 1334680 3331968 ~ 3433129 (-)
G39624 LOC108263251,LOC108434122,LOC107559642,LOC107737095,LOC107674247 non-coding downstream 45714 1938680 ~ 1941748 (-)
G39596 NA non-coding downstream 133824 1852013 ~ 1853638 (-)
G39589 NA non-coding downstream 141100 1844765 ~ 1846362 (-)
G39570 NA non-coding downstream 162866 1823848 ~ 1824596 (-)
LOC117596905 NA non-coding downstream 296468 1686729 ~ 1690994 (-)
LOC117596860 NA non-coding upstream 1211 1998499 ~ 2000262 (-)
G39662 NA non-coding upstream 47827 2045115 ~ 2091336 (-)
G39672 NA non-coding upstream 62466 2059754 ~ 2060427 (-)
G39696 NA non-coding upstream 95804 2093092 ~ 2093298 (-)
G39699 tmem134 non-coding upstream 111822 2109110 ~ 2113534 (-)
lgi2b LOC108263253,LOC108411628 other downstream 7913 1969763 ~ 1979549 (-)
G39603 casp6,LOC108263800,LOC108434124 other downstream 109879 1871933 ~ 1877583 (-)
cntln cntln,LOC108263774 other downstream 618450 1270445 ~ 1369012 (-)
LOC113524614 NA other downstream 980412 1004477 ~ 1007050 (-)
G38400 NA other downstream 1671934 314981 ~ 315528 (-)
G39720 NA other upstream 176070 2173358 ~ 2173751 (-)
tenm3 tenm3,LOC108434131 other upstream 222859 2220147 ~ 2984203 (-)
trnae-uuc NA other upstream 1035444 3032732 ~ 3032803 (-)
trnah-gug_2 NA other upstream 1036578 3033866 ~ 3033937 (-)
trnah-gug_3 NA other upstream 1037194 3034482 ~ 3034553 (-)

Expression


Co-expression Network