LOC117596860



Basic Information


Item Value
gene id LOC117596860
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1998499 ~ 2000262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU47007
TTTTCAGAAGGTGCTGGTGCTGGACCCTTCTCTGGGGCCGGCCGTGGCCAGAGAGATCCGAGCGATGGAGGAGCGCCTccgagagaaagacaaagaggagAAAGGACGCTACAAAAAACTCTTCACCTCCAGCGGCAGTTCAGCAGCAGCTACTACGAGCTGAAACCGGCGTGGACGTTTTCTTTAGTCGCTCCTGAAGAGATGCTCCATTACAGAGAAGCTGGAACACCTGAGCACATTGTGAACTCTTCGCCATTTCAACACGAGCAGCTTCCTTGTCTTatttccctcacacacacacacacacacacacacaccccaatcCTCATTAACACcctcacaccattacaccacacaaataaataaataaataaatctctgcaGTGTAACtagggctgtgtcccaaatgctaAAGTTCTTACAAGGCAGCATGATGAAGGACACCGTGTTACACCACGTTGGGGACATTAGATGTGACCTCTAGCGTTTAGGACACACCCTAGACGTGAGGTGAGGTGCTAATTCGAAGGAGCTCACCTTTAATTTTGCACAAAATTTACAGGCTCGATGCGTCAGACCCTGGTGAAATTAAGGGACCTGGAAATGGGACACGCCCCCAAGAGAGAGACAATCAGATATAAAGTCCTCTAGCGCCTTGTCATTCTTTCTGTAGTAATCCTGTCTATCTTTCATGTTAGCTTCTCTCTGTAATTATTATTGTCTTTAAAATGTACGTGTGTATCGtttcttttaaatgtgtaaacCATCACACGTGAATTTACGCAGAAATGGTcgcaattaaataaataacgtgGACGATATACTCGTATATCGATGTCGCTACTGTCGTCTATCCCGCAGATTATCTTAAAcgttttcagaaatatttttgtcaaCATGGAatcattaccaaaaaaaataaatcactcgTAAAAGCATTTATAATTGTTACActacacttcctgtttttttttttttaaatcgttcAAACTTCTTAGCGAAGATAAATATCATGAAACGTGACGTGTTTTGTTGTGAAAATGTTACGTAGGAAACTATAAGGTTGCGATGATTTTTCTCACCCCGACTCATGGAATTAACCAGAGACCATCTGCATTTACTCCAtctgaatgtgtttttgtttacgCCTTATATGTCACTGTAAAAGACAACGCTGCATTTATGTTATAACAaaagccaaataaaaaaaaactaagg
>TU47008
TTTTCAGAAGGTGCTGGTGCTGGACCCTTCTCTGGGGCCGGCCGTGGCCAGAGAGATCCGAGCGATGGAGGAGCGCCTccgagagaaagacaaagaggagAAAGGACGCTACAAAAAACTCTTCACCTCCAGCGGCAGTTCAGCAGCAGCTACTACGAGCTGAAACCGGCGTGGACGTTTTCTTTAGTCGCTCCTGAAGAGATGCTCCATTACAGAGAAGCTGGAACACCTGAGCACATTGTGAACTCTTCGCCATTTCAACACGAGCAGCTTCCTTGTCTTatttccctcacacacacacacacacacacacacaccccaatcCTCATTAACACcctcacaccattacaccacacaaataaataaataaataaatctctgcaGTGTAACtagggctgtgtcccaaatgctaAAGTTCTTACAAGGCAGCATGATGAAGGACACCGTGTTACACCACGTTGGGGACATTAGATGTGACCTCTAGCGTTTAGGACACACCCTAGACGTGAGGTGAGGTGCTAATTCGAAGGAGCTCACCTTTAATTTTGCACAAAATTTACAGGCTCGATGCGTCAGACCCTGGTGAAATTAAGGGACCTGGAAATGGGACACGCCCCCAAGAGAGAGACAATCAGATATAAAGTCCTCTAGCGCCTTGTCATTCTTTCTGTAGTAATCCTGTCTATCTTTCATGTTAGCTTCTCTCTGTAATTATTATTGTCTTTAAAATGTACGTGTGTATCGtttcttttaaatgtgtaaacCATCACACGTGAATTTACGCAGAAATGGTcgcaattaaataaataacgtgGACGATATACTCGTATATCGATGTCGCTACTGTCGTCTATCCCGCAGATTATCTTAAAcgttttcagaaatatttttgtcaaCATGGAatcattaccaaaaaaaataaatcactcgTAAAAGCATTTATAATTGTTACActacacttcctgtttttttttttttaaatcgttcAAACTTCTTAGCGAAGATAAATATCATGAAACGTGACGTGTTTTGTTGTGAAAATGTTACGTAGGAAACTATAAGGTTGCGATGATTTTTCTCACCCCGACTCATGGAATTAACCAGAGACCATCTGCATTTACTCCAtctgaatgtgtttttgtttacgCCTTATATGTCACTGTAAAAGACAACGCTGCATTTATGTTATAACAaaagccaaataaaaaaaaactaaggaAAGTAAACGTATTATCTATAGATGTGTTGTTCACAGACGAGTCGGATCATGATGAGACTCTACTCACATTTACAGTTCTCTCTGAAACTATTGGAACAAACAGCAAgactaattatttttattcatgctttacactgaagacatttgggtttgagatcagaagatgaatatgagacgatagatcagtatttcagcttttatttcctgacatttacatctagaACTGAGGACATGGCACCTTCGGTGGCAGGCCacacaatttttaggtgagcaaaagtattggaacagctagtcttaaagtaaataacacttaatatttggttgcgtATCTCttacttgcaataactgcatcaagccggtgacccgctgacatcaccaaactgtttcattcttcttttgtga
>XR_004577845.1
TTTCAGAAGGTGCTGGTGCTGGACCCTTCTCTGGGGCCGGCCGTGGCCAGAGAGATCCGAGCGATGGAGGAGCGCCTccgagagaaagacaaagaggagAAAGGACGCTACAAAAAACTCTTCACCTCCAGCGGCAGTTCAGCAGCAGCTACTACGAGCTGAAACCGGCGTGGACGTTTTCTTTAGTCGCTCCTGAAGAGATGCTCCATTACAGAGAAGCTGGAACACCTGAGCACATTGTGAACTCTTCGCCATTTCAACACGAGCAGCTTCCTTGTCTTatttccctcacacacacacacacacacacacacaccccaatcCTCATTAACACcctcacaccattacaccacacaaataaataaataaataaatctctgcaGTGTAACtagggctgtgtcccaaatgctaAAGTTCTTACAAGGCAGCATGATGAAGGACACCGTGTTACACCACGTTGGGGACATTAGATGTGACCTCTAGCGTTTAGGACACACCCTAGACGTGAGGTGAGGTGCTAATTCGAAGGAGCTCACCTTTAATTTTGCACAAAATTTACAGGCTCGATGCGTCAGACCCTGGTGAAATTAAGGGACCTGGAAATGGGACACGCCCCCAAGAGAGAGACAATCAGATATAAAGTCCTCTAGCGCCTTGTCATTCTTTCTGTAGTAATCCTGTCTATCTTTCATGTTAGCTTCTCTCTGTAATTATTATTGTCTTTAAAATGTACGTGTGTATCGtttcttttaaatgtgtaaacCATCACACGTGAATTTACGCAGAAATGGTcgcaattaaataaataacgtgGACGATATACTCGTATATCGATGTCGCTACTGTCGTCTATCCCGCAGATTATCTTAAAcgttttcagaaatatttttgtcaaCATGGAatcattaccaaaaaaaataaatcactcgTAAAAGCATTTATAATTGTTACActacacttcctgtttttttttttttaaatcgttcAAACTTCTTAGCGAAGATAAATATCATGAAACGTGACGTGTTTTGTTGTGAAAATGTTACGTAGGAAACTATAAGGTTGCGATGATTTTTCTCACCCCGACTCATGGAATTAACCAGAGACCATCTGCATTTACTCCAtctgaatgtgtttttgtttacgCCTTATATGTCACTGTAAAAGACAACGCTGCATTTATGTTATAACAaaagccaaataaaaaaaaactaaggaAAGTAAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU47007 False 1218 lncRNA 0.41 2 1998902 2000262
TU47008 True 1621 lncRNA 0.42 2 1998499 2000262
XR_004577845.1 False 1225 lncRNA 0.41 2 1998894 2000261

Neighbor


gene id symbol gene type direction distance location
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding downstream 33592 1947375 ~ 1964907 (-)
si:ch211-113e8.11 LOC108263804 coding downstream 103400 1893586 ~ 1895099 (-)
snapc3 snapc3 coding downstream 177654 1810150 ~ 1820845 (-)
anp32b anp32b coding downstream 845149 1146129 ~ 1153350 (-)
ints12 ints12 coding downstream 928684 1065387 ~ 1069815 (-)
aip aip,LOC106609959 coding upstream 1187 2001449 ~ 2007253 (-)
sod3b sod3 coding upstream 7647 2007909 ~ 2011692 (-)
irf2a LOC108263359,LOC108434128 coding upstream 126556 2126818 ~ 2143166 (-)
spcs3 spcs3,LOC106602378 coding upstream 1288468 3288730 ~ 3293879 (-)
wdr17 wdr17 coding upstream 1331706 3331968 ~ 3433129 (-)
G39646 NA non-coding downstream 1211 1987462 ~ 1997288 (-)
G39624 LOC108263251,LOC108434122,LOC107559642,LOC107737095,LOC107674247 non-coding downstream 56751 1938680 ~ 1941748 (-)
G39596 NA non-coding downstream 144861 1852013 ~ 1853638 (-)
G39589 NA non-coding downstream 152137 1844765 ~ 1846362 (-)
G39570 NA non-coding downstream 173903 1823848 ~ 1824596 (-)
G39662 NA non-coding upstream 44853 2045115 ~ 2091336 (-)
G39672 NA non-coding upstream 59492 2059754 ~ 2060427 (-)
G39696 NA non-coding upstream 92830 2093092 ~ 2093298 (-)
G39699 tmem134 non-coding upstream 108848 2109110 ~ 2113534 (-)
G39705 NA non-coding upstream 123713 2123975 ~ 2126647 (-)
lgi2b LOC108263253,LOC108411628 other downstream 18950 1969763 ~ 1979549 (-)
G39603 casp6,LOC108263800,LOC108434124 other downstream 120916 1871933 ~ 1877583 (-)
cntln cntln,LOC108263774 other downstream 629487 1270445 ~ 1369012 (-)
LOC113524614 NA other downstream 991449 1004477 ~ 1007050 (-)
G38400 NA other downstream 1682971 314981 ~ 315528 (-)
G39720 NA other upstream 173096 2173358 ~ 2173751 (-)
tenm3 tenm3,LOC108434131 other upstream 219885 2220147 ~ 2984203 (-)
trnae-uuc NA other upstream 1032470 3032732 ~ 3032803 (-)
trnah-gug_2 NA other upstream 1033604 3033866 ~ 3033937 (-)
trnah-gug_3 NA other upstream 1034220 3034482 ~ 3034553 (-)

Expression



Co-expression Network