Gene
RNA
| Item | Value |
|---|---|
| gene id | G39662 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 2045115 ~ 2091336 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase arih1 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47034 | True | 749 | lncRNA | 0.32 | 2 | 2045115 | 2091336 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sod3b | sod3 | coding | downstream | 33423 | 2007909 ~ 2011692 (-) |
| aip | aip,LOC106609959 | coding | downstream | 37862 | 2001449 ~ 2007253 (-) |
| ccdc149b | ccdc149b,LOC108263252,LOC107550975,LOC105908379 | coding | downstream | 80208 | 1947375 ~ 1964907 (-) |
| si:ch211-113e8.11 | LOC108263804 | coding | downstream | 150016 | 1893586 ~ 1895099 (-) |
| snapc3 | snapc3 | coding | downstream | 224270 | 1810150 ~ 1820845 (-) |
| irf2a | LOC108263359,LOC108434128 | coding | upstream | 35482 | 2126818 ~ 2143166 (-) |
| spcs3 | spcs3,LOC106602378 | coding | upstream | 1197394 | 3288730 ~ 3293879 (-) |
| wdr17 | wdr17 | coding | upstream | 1240632 | 3331968 ~ 3433129 (-) |
| cep44 | cep44 | coding | upstream | 1592107 | 3683443 ~ 3699520 (-) |
| galnt7 | galnt7 | coding | upstream | 1752143 | 3843479 ~ 3869764 (-) |
| G39627 | NA | non-coding | downstream | 32227 | 1961768 ~ 2012888 (-) |
| LOC117596860 | NA | non-coding | downstream | 44853 | 1998499 ~ 2000262 (-) |
| G39646 | NA | non-coding | downstream | 47827 | 1987462 ~ 1997288 (-) |
| G39624 | LOC108263251,LOC108434122,LOC107559642,LOC107737095,LOC107674247 | non-coding | downstream | 103367 | 1938680 ~ 1941748 (-) |
| G39596 | NA | non-coding | downstream | 191477 | 1852013 ~ 1853638 (-) |
| G39696 | NA | non-coding | upstream | 1756 | 2093092 ~ 2093298 (-) |
| G39699 | tmem134 | non-coding | upstream | 17774 | 2109110 ~ 2113534 (-) |
| G39705 | NA | non-coding | upstream | 32639 | 2123975 ~ 2126647 (-) |
| G39707 | NA | non-coding | upstream | 46111 | 2137447 ~ 2139849 (-) |
| G39774 | NA | non-coding | upstream | 386356 | 2477692 ~ 2478424 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | downstream | 65566 | 1969763 ~ 1979549 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | downstream | 167532 | 1871933 ~ 1877583 (-) |
| cntln | cntln,LOC108263774 | other | downstream | 676103 | 1270445 ~ 1369012 (-) |
| LOC113524614 | NA | other | downstream | 1038065 | 1004477 ~ 1007050 (-) |
| G38400 | NA | other | downstream | 1729587 | 314981 ~ 315528 (-) |
| G39720 | NA | other | upstream | 82022 | 2173358 ~ 2173751 (-) |
| tenm3 | tenm3,LOC108434131 | other | upstream | 128811 | 2220147 ~ 2984203 (-) |
| trnae-uuc | NA | other | upstream | 941396 | 3032732 ~ 3032803 (-) |
| trnah-gug_2 | NA | other | upstream | 942530 | 3033866 ~ 3033937 (-) |
| trnah-gug_3 | NA | other | upstream | 943146 | 3034482 ~ 3034553 (-) |
