Gene
RNA
| Item | Value |
|---|---|
| gene id | G39720 |
| gene name | NA |
| gene type | unknown |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 2173358 ~ 2173751 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47094 | True | 394 | TUCP | 0.38 | 1 | 2173358 | 2173751 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| irf2a | LOC108263359,LOC108434128 | coding | downstream | 30192 | 2126818 ~ 2143166 (-) |
| sod3b | sod3 | coding | downstream | 161666 | 2007909 ~ 2011692 (-) |
| aip | aip,LOC106609959 | coding | downstream | 166105 | 2001449 ~ 2007253 (-) |
| ccdc149b | ccdc149b,LOC108263252,LOC107550975,LOC105908379 | coding | downstream | 208451 | 1947375 ~ 1964907 (-) |
| si:ch211-113e8.11 | LOC108263804 | coding | downstream | 278259 | 1893586 ~ 1895099 (-) |
| spcs3 | spcs3,LOC106602378 | coding | upstream | 1114979 | 3288730 ~ 3293879 (-) |
| wdr17 | wdr17 | coding | upstream | 1158217 | 3331968 ~ 3433129 (-) |
| cep44 | cep44 | coding | upstream | 1509692 | 3683443 ~ 3699520 (-) |
| galnt7 | galnt7 | coding | upstream | 1669728 | 3843479 ~ 3869764 (-) |
| galntl6 | galntl6,si:ch211-15e22.3,LOC107670789 | coding | upstream | 1703439 | 3877190 ~ 4089518 (-) |
| G39707 | NA | non-coding | downstream | 33509 | 2137447 ~ 2139849 (-) |
| G39705 | NA | non-coding | downstream | 46711 | 2123975 ~ 2126647 (-) |
| G39699 | tmem134 | non-coding | downstream | 59824 | 2109110 ~ 2113534 (-) |
| G39696 | NA | non-coding | downstream | 80060 | 2093092 ~ 2093298 (-) |
| G39662 | NA | non-coding | downstream | 82022 | 2045115 ~ 2091336 (-) |
| G39774 | NA | non-coding | upstream | 303941 | 2477692 ~ 2478424 (-) |
| G39854 | NA | non-coding | upstream | 551554 | 2725305 ~ 2727474 (-) |
| G40250 | NA | non-coding | upstream | 1319914 | 3493665 ~ 3583108 (-) |
| G40278 | NA | non-coding | upstream | 1466013 | 3639764 ~ 3640380 (-) |
| G40315 | NA | non-coding | upstream | 1495096 | 3668847 ~ 3672053 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | downstream | 193809 | 1969763 ~ 1979549 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | downstream | 295775 | 1871933 ~ 1877583 (-) |
| cntln | cntln,LOC108263774 | other | downstream | 804346 | 1270445 ~ 1369012 (-) |
| LOC113524614 | NA | other | downstream | 1166308 | 1004477 ~ 1007050 (-) |
| G38400 | NA | other | downstream | 1857830 | 314981 ~ 315528 (-) |
| tenm3 | tenm3,LOC108434131 | other | upstream | 46396 | 2220147 ~ 2984203 (-) |
| trnae-uuc | NA | other | upstream | 858981 | 3032732 ~ 3032803 (-) |
| trnah-gug_2 | NA | other | upstream | 860115 | 3033866 ~ 3033937 (-) |
| trnah-gug_3 | NA | other | upstream | 860731 | 3034482 ~ 3034553 (-) |
| dclk2a | LOC108263760,LOC108429594 | other | upstream | 2371388 | 4545139 ~ 4609450 (-) |
