LOC113545357


Basic Information

Item Value
gene id LOC113545357
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3831867 ~ 3834626 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU47789
TAAATGCTGAATCCAGATTCATCCAGTTGAGACATCCCACATCTCGGCGTTCCATGCAGGATCACAAAATGAAAGTATTAACCATCTCAGTCTTTCTCCTGCTCGGGTTACATATGGGAGATGCGATTCCGTCAAACCGCGGGTCCTGCTATAAAAAGATAGTGAAGGATAGAAACTGCCATGACATTGGACTGGAGAGGATGAGACCCATCGACTCACTACAAAACCATTACTGGGAGGGCAATGAGTGTGACGTGGTGTGTTACTGCAACTTCTTCGAGCTGCTCTGCTGCCCCAGaACCGTCTTCTTTGGGTCGAAAATCTCCTTTGTGATCCCATGCAAAACTTCTGAAACTGGACCAAATGTCAAAGCAGCGGAATAACATTCTGTGCTAATTCTGTTATAAAACATGCAGTATCTAGTTTCATGTAAATCTGCTTGGTCGCGGTTTGTGCACAGTCTGTCCTCTTTTATGGCAGTGTGTCCCATTCTGGAGGTATACTGGTCATGTACTAACCCTAATCTAACACATATGATAAACATAACTAAACCCTGTCCCAACCAACATATCACTACACTACCTAgcatattgtttatattaagaCATGCTTATATGCAGTTTCGTGTATTAGACCCAGCTGTGATGCATGAGGATGAGCTCTAAACTGGTGGCTAAGATTATACCGTCCTGCCTTTATACTGTTCAATTCTCAAATCAACTCAGACATGTAGACCTTACAGAAATTACCATTAAAGTCATTTCTACAATCCATTTAAATGGCGTAACCCAGTAAAAAACAGACTATTATAATTAGGTACGGGGTATTGTGCTCAGGCTGATGCTTGTCTGATTTTAGACAATGCAGCTTTGAAGGATTCATTACACATCTGATAAATACAAAGCCTTGAACTgtataaactttattaaataaaaccaa
>XM_026944688.2
ctgagagagagagagagagagagagagagagaaaagggagggagagacTATCACAGAGGAGTGATATAAGGAGCTCACTGTGTAAATGCTGAATCCAGATTCATCCAGTTGAGACATCCCACATCTCGGCGTTCCATGCAGGATCACAAAATGAAAGTATTAACCATCTCAGTCTTTCTCCTGCTCGGGTTACATATGGGAGATGCGATTCCGTCAAACCGCGGGTCCTGCTATAAAAAGATAGTGAAGGATAGAAACTGCCATGACATTGGACTGGAGAGGATGAGACCCATCGACTCACTACAAAACCATTACTGGGAGGGCAATGAGTGTGACGTGGTGTGTTACTGCAACTTCTTCGAGCTGCTCTGCTGCCCCAGaACCGTCTTCTTTGGGTCGAAAATCTCCTTTGTGATCCCATGCAAAACTTCTGAAACTGGACCAAATGTCAAAGCAGCGGAATAACATTCTGTGCTAATTCTGTTATAAAACATGCAGTATCTAGTTTCATGTAAATCTGCTTGGTCGCGGTTTGTGCACAGTCTGTCCTCTTTTATGGCAGTGTGTCCCATTCTGGAGGTATACTGGTCATGTACTAACCCTAATCTAACACATATGATAAACATAACTAAACCCTGTCCCAACCAACATATCACTACACTACCTAgcatattgtttatattaagaCATGCTTATATGCAGTTTCGTGTATTAGACCCAGCTGTGATGCATGAGGATGAGCTCTAAACTGGTGGCTAAGATTATACCGTCCTGCCTTTATACTGTTCAATTCTCAAATCAACTCAGACATGTAGACCTTACAGAAATTACCATTAAAGTCATTTCTACAATCCATTTAAATGGCGTAACCCAGTAAAAAACAGACTATTATAATTAGGTACGGGGTATTGTGCTCAGGCTGATGCTTGTCTGATTTTAGACAATGCAGCTTTGAAGGATTCATTACACATCTGATAAATACAAAGCCTTGAACTgtataaactttattaaataaaaccaacAGCATTGAATGTGA
>XM_034302875.1
AATCCAGATTCATCCAGTTGAGACATCCCACATCTCGGCGTTCCATGCAGGTGAGCACGAacgaacgaacacacacacacacacacggGATCACAAAATGAAAGTATTAACCATCTCAGTCTTTCTCCTGCTCGGGTTACATATGGGAGATGCGATTCCGTCAAACCGCGGGTCCTGCTATAAAAAGATAGTGAAGGATAGAAACTGCCATGACATTGGACTGGAGAGGATGAGACCCATCGACTCACTACAAAACCATTACTGGGAGGGCAATGAGTGTGACGTGGTGTGTTACTGCAACTTCTTCGAGCTGCTCTGCTGCCCCAGaACCGTCTTCTTTGGGTCGAAAATCTCCTTTGTGATCCCATGCAAAACTTCTGAAACTGGACCAAATGTCAAAGCAGCGGAATAACATTCTGTGCTAATTCTGTTATAAAACATGCAGTATCTAGTTTCATGTAAATCTGCTTGGTCGCGGTTTGTGCACAGTCTGTCCTCTTTTATGGCAGTGTGTCCCATTCTGGAGGTATACTGGTCATGTACTAACCCTAATCTAACACATATGATAAACATAACTAAACCCTGTCCCAACCAACATATCACTACACTACCTAgcatattgtttatattaagaCATGCTTATATGCAGTTTCGTGTATTAGACCCAGCTGTGATGCATGAGGATGAGCTCTAAACTGGTGGCTAAGATTATACCGTCCTGCCTTTATACTGTTCAATTCTCAAATCAACTCAGACATGTAGACCTTACAGAAATTACCATTAAAGTCATTTCTACAATCCATTTAAATGGCGTAACCCAGTAAAAAACAGACTATTATAATTAGGTACGGGGTATTGTGCTCAGGCTGATGCTTGTCTGATTTTAGACAATGCAGCTTTGAAGGATTCATTACACATCTGATAAATACAAAGCCTTGAACTgtataaactttattaaataaaaccaacAGCATTGAATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47789 False 939 TUCP 0.42 3 3831949 3834611
XM_026944688.2 True 1036 mRNA 0.41 3 3831867 3834626
XM_034302875.1 False 983 mRNA 0.41 3 3831958 3834626

Neighbor

gene id symbol gene type direction distance location
hand2 hand2 coding upstream 26038 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 119031 3700579 ~ 3712836 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 163375 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 190119 3572427 ~ 3641748 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding upstream 328747 3434345 ~ 3503120 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding downstream 4100 3838726 ~ 3840862 (+)
scpp1 LOC108262830 coding downstream 648922 4483548 ~ 4487275 (+)
tnip2 tnip2 coding downstream 661006 4495632 ~ 4500384 (+)
prmt9 prmt9 coding downstream 1048370 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 1765259 5599885 ~ 5626477 (+)
G40287 NA non-coding upstream 146662 3683343 ~ 3685205 (+)
LOC117596918 NA non-coding upstream 306746 3515101 ~ 3525121 (+)
LOC117596855 NA non-coding upstream 428761 3400795 ~ 3403106 (+)
G38962 NA non-coding upstream 1400780 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 1405267 2411201 ~ 2426600 (+)
G40374 NA non-coding downstream 30070 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 295489 4130115 ~ 4130322 (+)
G40590 NA non-coding downstream 392567 4227193 ~ 4227431 (+)
G40591 NA non-coding downstream 393556 4228182 ~ 4228548 (+)
G40592 NA non-coding downstream 394766 4229392 ~ 4229622 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1740524 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1834602 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2607266 1194219 ~ 1224601 (+)
trmo trmo other upstream 2643273 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 2689933 1102778 ~ 1141934 (+)
nr3c2 nr3c2,LOC107598757 other downstream 829690 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1428956 5263582 ~ 5357860 (+)
G41047 NA other downstream 1483908 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2060805 5895431 ~ 6228685 (+)
G42075 NA other downstream 3369324 7203950 ~ 7221023 (+)

Expression


Co-expression Network