Gene
RNA
| Item | Value |
|---|---|
| gene id | G40522 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 3792229 ~ 3841160 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47974 | False | 221 | lncRNA | 0.24 | 2 | 3792229 | 3841160 |
| TU47975 | True | 246 | lncRNA | 0.26 | 2 | 3810868 | 3841160 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cep44 | cep44 | coding | downstream | 92709 | 3683443 ~ 3699520 (-) |
| wdr17 | wdr17 | coding | downstream | 359100 | 3331968 ~ 3433129 (-) |
| spcs3 | spcs3,LOC106602378 | coding | downstream | 498350 | 3288730 ~ 3293879 (-) |
| irf2a | LOC108263359,LOC108434128 | coding | downstream | 1649063 | 2126818 ~ 2143166 (-) |
| sod3b | sod3 | coding | downstream | 1780537 | 2007909 ~ 2011692 (-) |
| galnt7 | galnt7 | coding | upstream | 2319 | 3843479 ~ 3869764 (-) |
| galntl6 | galntl6,si:ch211-15e22.3,LOC107670789 | coding | upstream | 36030 | 3877190 ~ 4089518 (-) |
| LOC113542265 | NA | coding | upstream | 388662 | 4229822 ~ 4248823 (-) |
| LOC113542293 | NA | coding | upstream | 418571 | 4259731 ~ 4274167 (-) |
| LOC117596921 | NA | coding | upstream | 443215 | 4284375 ~ 4289439 (-) |
| G40323 | NA | non-coding | downstream | 79396 | 3702221 ~ 3712833 (-) |
| G40316 | NA | non-coding | downstream | 118418 | 3673150 ~ 3673811 (-) |
| G40315 | NA | non-coding | downstream | 120176 | 3668847 ~ 3672053 (-) |
| G40278 | NA | non-coding | downstream | 151849 | 3639764 ~ 3640380 (-) |
| G40250 | NA | non-coding | downstream | 209121 | 3493665 ~ 3583108 (-) |
| LOC117596430 | NA | non-coding | upstream | 647386 | 4488546 ~ 4496696 (-) |
| G40770 | NA | non-coding | upstream | 696899 | 4538059 ~ 4539526 (-) |
| G40936 | NA | non-coding | upstream | 824362 | 4665522 ~ 4665725 (-) |
| G40938 | nr3c2 | non-coding | upstream | 826046 | 4667206 ~ 4668993 (-) |
| G40962 | nr3c2,LOC107550687,LOC107742541,LOC107670737 | non-coding | upstream | 898224 | 4739384 ~ 4739711 (-) |
| trnah-gug_3 | NA | other | downstream | 757676 | 3034482 ~ 3034553 (-) |
| trnah-gug_2 | NA | other | downstream | 758292 | 3033866 ~ 3033937 (-) |
| trnae-uuc | NA | other | downstream | 759426 | 3032732 ~ 3032803 (-) |
| tenm3 | tenm3,LOC108434131 | other | downstream | 808026 | 2220147 ~ 2984203 (-) |
| G39720 | NA | other | downstream | 1618478 | 2173358 ~ 2173751 (-) |
| dclk2a | LOC108263760,LOC108429594 | other | upstream | 703979 | 4545139 ~ 4609450 (-) |
| tmem184c | tmem184c,LOC107742544,LOC107670728,LOC107654969 | other | upstream | 1052742 | 4893902 ~ 4906239 (-) |
| lsm6 | lsm6 | other | upstream | 1362546 | 5203706 ~ 5227967 (-) |
| gab1 | gab1 | other | upstream | 1914857 | 5756017 ~ 5819513 (-) |
| lef1 | lef1,LOC103361279 | other | upstream | 3320314 | 7161474 ~ 7204699 (-) |
