G40590


Basic Information

Item Value
gene id G40590
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4227193 ~ 4227431 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48049
GTTGAAACAAAGtagtataatgtatatacacaaaAGTAGTatgataaatgcataaataaggCCAAAGGATAATCCGAAGagtaaatttacaaaaacagtAAGGGATACTCAAGGCTTGAAACTTAGAAACATACAAGCAATGATCGAATATACGCTTAAATAGTCCAAAACCTGGAAGTGATAGCAGAGGTGGTGCTAGAACTCCAGTGAATGTGACCTCTGTTAGAGGGGAAATATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48049 True 239 lncRNA 0.36 1 4227193 4227431

Neighbor

gene id symbol gene type direction distance location
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 386331 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 421364 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 514357 3700579 ~ 3712836 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 558701 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 585445 3572427 ~ 3641748 (+)
scpp1 LOC108262830 coding downstream 256117 4483548 ~ 4487275 (+)
tnip2 tnip2 coding downstream 268201 4495632 ~ 4500384 (+)
prmt9 prmt9 coding downstream 655565 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 1372454 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 1409436 5636867 ~ 5674128 (+)
G40586 NA non-coding upstream 96871 4130115 ~ 4130322 (+)
G40374 NA non-coding upstream 362193 3864696 ~ 3865000 (+)
G40287 NA non-coding upstream 541988 3683343 ~ 3685205 (+)
LOC117596918 NA non-coding upstream 702072 3515101 ~ 3525121 (+)
LOC117596855 NA non-coding upstream 824087 3400795 ~ 3403106 (+)
G40591 NA non-coding downstream 751 4228182 ~ 4228548 (+)
G40592 NA non-coding downstream 1961 4229392 ~ 4229622 (+)
G40644 NA non-coding downstream 57269 4284700 ~ 4289429 (+)
G40665 NA non-coding downstream 187155 4414586 ~ 4414796 (+)
LOC117596893 NA non-coding downstream 200568 4427999 ~ 4430867 (+)
LOC113545357 NA other upstream 392567 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2135850 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 2229928 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3002592 1194219 ~ 1224601 (+)
trmo trmo other upstream 3038599 1165845 ~ 1188594 (+)
nr3c2 nr3c2,LOC107598757 other downstream 436885 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1036151 5263582 ~ 5357860 (+)
G41047 NA other downstream 1091103 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 1668000 5895431 ~ 6228685 (+)
G42075 NA other downstream 2976519 7203950 ~ 7221023 (+)

Expression


Co-expression Network