G40683


Basic Information

Item Value
gene id G40683
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4462470 ~ 4512698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48156
aactgaaaaaaaaaaaaaaaaaaaaaaaaaaaacctaacacTTTACGGAACAGTTGTTTAATGGAACTGAATAACCCAACGAGAACAATCGGTCAAGTATTAGCCATCTTCCTGGTGTGGACCAAGTGGCCAAGGGGAGGGAGCTGAAGTGCCCTAGTCCCGTTCCCTTCTCAGCTAACTGTAATGAAGTGCAAAAACTGTTCGCATCCACAAATACTGGGAATAAAAGgctctttttttcacttcttaacaacttcagaattttttttcttgtttggaTGTTTCACATGGCCTCCATCCAAACTCACATCAAGGATTTTGATAGGAGGAGCAACGGCCACCTCGGAGATATtcgaaacagaagaaaacatgaaCGGTAGAGTGGCAttttgtggttgtttttttttttttcttttcctgtctgtcctttttttttccctcctcctccctAAGTACTGCAAAGCTGAGTGTCTGGATTCTTTTGAGGAACCATACAGCGACAAGGACAAGgcaaggcattgtgggtaatgtaggtcGGAGGAGCAGTTGGTTGGAGCGTAGCAGCACTGGGATCAGCAGTCAGCCtggtgagaggagagagaaggagaggagagagagagagggagagagagagaggatcgcTGATTGAATCCTGACACTCTCTGAAGGAGGATCTCGTCTCGTCCTCTCGTTAGTGAAACGCAAAAGTGGCCTTTTTCAAGCTGAAGTTGGACCAGTTGATGGACAGCCTCTGTCTTGTCTGTCTAGCAGAGTCTAAGCAGA
>TU48157
aaaaaaaaaaaaaaaaagaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaacctaacacTTTACGGAACAGTTGTTTAATGGAACTGAATAACCCAACGAGAACAATCGGTCAAGTATTAGCCATCTTCCTGGTGTGGACCAAGTGGCCAAGGGGAGGGAGCTGAAGTGCCCTAGTCCCGTTCCCTTCTCAGCTAACTGTAATGAAGTGCAAAAACTGTTCGCATCCACAAATACTGGGAATAAAAGgctctttttttcacttcttaacaacttcagaattttttttcttgtttggaTGTTTCACATGGCCTCCATCCAAACTCACATCAAGGATTTTGATAGGAGGAGCAACGGCCACCTCGGAGATATtcgaaacagaagaaaacatgaaCGGTAGAGTGGCAttttgtggttgtttttttttttttcttttcctgtctgtcctttttttttccctcctcctccctAAGTACTGCAAAGCTGAGTGTCTGGATTCTTTTGAGGAACCATACAGCGACAAGGACAAGgcaaggcattgtgggtaatgtaggtcGGAGGAGCAGTTGGTTGGAGCGTAGCAGCACTGGGATCAGCAGTCAGCCtggtgagaggagagagaaggagaggagagagagagagggagagagagagaggatcgcTGATTGAATCCTGACACTCTCTGAAGGAGGATCTCGTCTCGTCCTCTCGTTAGTGAAACGCAAAAGTGGCCTTTTTCAAGCTGAAGTTGGACCAGTTGATGGACAGCCTCTGTCTTGTCTGTCTAGCAGAGTCTAAGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48156 False 783 lncRNA 0.42 2 4462470 4512698
TU48157 True 801 lncRNA 0.45 2 4491909 4512698

Neighbor

gene id symbol gene type direction distance location
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 621608 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 656641 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 749634 3700579 ~ 3712836 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 793978 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 820722 3572427 ~ 3641748 (+)
prmt9 prmt9 coding downstream 370298 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 1087187 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 1124169 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 1164482 5677180 ~ 5689962 (+)
LOC113542501 LOC108263484 coding downstream 1184508 5697206 ~ 5716038 (+)
LOC117596893 NA non-coding upstream 31603 4427999 ~ 4430867 (+)
G40665 NA non-coding upstream 47674 4414586 ~ 4414796 (+)
G40644 NA non-coding upstream 173041 4284700 ~ 4289429 (+)
G40592 NA non-coding upstream 232848 4229392 ~ 4229622 (+)
G40591 NA non-coding upstream 233922 4228182 ~ 4228548 (+)
G40704 NA non-coding downstream 29911 4542609 ~ 4545083 (+)
G40804 NA non-coding downstream 157056 4669754 ~ 4670544 (+)
G40805 NA non-coding downstream 158169 4670867 ~ 4671470 (+)
G40806 NA non-coding downstream 158930 4671628 ~ 4671901 (+)
G40807 NA non-coding downstream 159434 4672132 ~ 4672444 (+)
LOC113545357 NA other upstream 627844 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2371127 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 2465205 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3237869 1194219 ~ 1224601 (+)
trmo trmo other upstream 3273876 1165845 ~ 1188594 (+)
nr3c2 nr3c2,LOC107598757 other downstream 151618 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 750884 5263582 ~ 5357860 (+)
G41047 NA other downstream 805836 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 1382733 5895431 ~ 6228685 (+)
G42075 NA other downstream 2691252 7203950 ~ 7221023 (+)

Expression


Co-expression Network