G40770


Basic Information

Item Value
gene id G40770
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4538059 ~ 4539526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48257
tgcgtgccatTGTTATTGTTATGATGTAGAGACAGGAAGTTTTTACAGGAATTGTCATCACATTCACCGGCTTTTACAGCtcagtgtatttgtgtaaatgattaaatagtCGCAGTTAAGGATGTATCGATACGATACGGGAATCAGATATCGGTTTGACAGCATGCTCGATTAAAATGCTCCGATACATACATCTGATACTACGCGACACAATCCTGTGAACAGATGACACGAAATGGTGTGTTCCTCGATTAACCGAAGCAATCCAAGCAGAAGAATGCAACATGTTCTCTCCAGGAGGAGCTACAGCGTCTTCGTACAGCGTCTTCGTACAGCGTCTTCGTACAGCATCTTTGTACAGTGTCTCCGTACAGCGCACGCAACCTGATACAACAACATCTTTACTGAGATTAAACGTATCTTCAATACAGAGCGTGACCTGATCGGGGTCATCGAGCATCGtcgtttaaaacaaaaaaaaatgttccacacgcacacatggatgtattgtttattaatttagctGTTGAACGTGAGAGctgacatACAGAGACCTCTTTTCGCCAGTGTGTACGCTTTGCTCGGGAATCAAGTTGCGCTCGTTTTTAACGCCAGTGCTCGCTGAAATCGGTTGCCATTACACCCTCTACGAAAGATGCTATTCTCACCAAAAGTGTACAGAATGCTAAAGATGTCCAGGAGTCACCCTGAAGGAGCAGATTTTACATCCAGgctatcagttttgtttttaaatttttatttatttgtagtttCCTGACAAACTTGTAAGATTTACGACCAGAAAAAAGAAACGCGAACGCTActtctttattaaatttctcaaaaacaagcttttttgtttggtttgtatGTTGAAATGTGATGTGCTTCACAGCGACGCGATGTGACGCACCCTGATGCTGTAACTATTGTCAttctgaatcccaccacctgctgcactacacacatcgcTCGAGGTGTGACCTGGTTAACGCTCGAGCGGTTTTTACTAGTCGGATTAATTAGCGTGAACGGGTGACTGATGATCTTTTCGTAATCAGGGCATCCAGCGCAAAAAAGCTGTCGTATAACTCATTAATTAACGTCACTAGGGTTAGAGCTCCACGGCTCGTAGCTGAAACGTTCGCCGATGACTTGTTGACCTTTTGTTGAGGCCACAAACACGATGCTATGttagaaactttgttagaagaggatCAGTTTCAGACATGTCTGTTAAGGACGTCTTTTAGTGATTCTGATCAGTTCACACAGGATACGTCATCTCTGTAGAAGTAAGCATTTCACACAGTGCCTACTACACACCTCATTAAAACCAGCTGATTGTTTTGGGCGTTATCGTAAGCATTTGTCGTAGGGGGTGCGGTCGTGTATaagcaggtcatgtgaccataCCGTCGTGTATGTAGGCTTTACCTGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48257 True 1442 lncRNA 0.43 2 4538059 4539526

Neighbor

gene id symbol gene type direction distance location
sparcl1 LOC108262882 coding downstream 64761 4463696 ~ 4473298 (-)
LOC113542300 NA coding downstream 241930 4293496 ~ 4296129 (-)
LOC117596921 NA coding downstream 248620 4284375 ~ 4289439 (-)
LOC113542293 NA coding downstream 263892 4259731 ~ 4274167 (-)
LOC113542265 NA coding downstream 289236 4229822 ~ 4248823 (-)
arhgap10 arhgap10,LOC107742542 coding upstream 246247 4785773 ~ 4878809 (-)
ednraa ednra coding upstream 382262 4921788 ~ 4944595 (-)
pou4f2 pou4f2 coding upstream 538834 5078360 ~ 5081554 (-)
zgc:152968 LOC108262836 coding upstream 818015 5357541 ~ 5384816 (-)
mmaa mmaa,LOC102789515 coding upstream 851630 5391156 ~ 5401649 (-)
LOC117596430 NA non-coding downstream 41363 4488546 ~ 4496696 (-)
G40522 NA non-coding downstream 696899 3792229 ~ 3841160 (-)
G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding downstream 697117 3838818 ~ 3840942 (-)
LOC113545372 NA non-coding downstream 699877 3819051 ~ 3838182 (-)
G40323 NA non-coding downstream 825226 3702221 ~ 3712833 (-)
G40936 NA non-coding upstream 125996 4665522 ~ 4665725 (-)
G40938 nr3c2 non-coding upstream 127680 4667206 ~ 4668993 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding upstream 199858 4739384 ~ 4739711 (-)
G40966 NA non-coding upstream 204201 4743727 ~ 4744074 (-)
G40979 NA non-coding upstream 225553 4765079 ~ 4769220 (-)
trnah-gug_3 NA other downstream 1503506 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1504122 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1505256 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1553856 2220147 ~ 2984203 (-)
G39720 NA other downstream 2364308 2173358 ~ 2173751 (-)
dclk2a LOC108263760,LOC108429594 other upstream 5613 4545139 ~ 4609450 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 354376 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 664180 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1216491 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2621948 7161474 ~ 7204699 (-)

Expression


Co-expression Network