XLOC_005312 (tefa)


Basic Information

Item Value
gene id XLOC_005312
gene name tefa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19144833 ~ 19153177 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010198
AGGTCAAACACAGGCAAGTAGGTACTGTGAATGAAAAGGTGTGACGCGTCGAGTTTATTGCATTTGCAAGTATAGTGCGTGTTTCGTGTACACAACGTATTGAAGACATAAAGTCTCTTTCCTGGTTAAATCAACGTAAGGATTTGAAGTCGGTTTTAAAGTTACGCGCTGCACAAAAAAGCGTCGGGGGAACGGACATGAAGCCTATTTCCATCACGATGGACGCTGGCGCTGAAACTTCGGCTGCATTTCCagtagttttaaagaaaataatggaAACCCCTCCACCGAATCTTCTGGAAGGCGACGACGaaAATGATAAAGAGAAGCTGTTTGAGAGTGTGGAGTCTGGAGGGGTCAGTGAAATGGGACCTTCAGCCGCCTTAACGCCAGCCATCTGGGAAAAGACCATCCCCTATGATGGAGACACCTTCCACCTGGAGTACATGGATCTGGAGGAGTTTCTGATGGAGAACGGCATTGCTGCTGCAGAGAATGAGCAAAAGAGCAGTGAGAAGGAAAACATACAGCTGACGGCCGAGGAACCATCCACAGCCTCTGCAGTTAAAACAGCCCCAGCAGTCACTCTGTTGCCTGTCATGGCACTGGATCCGTGTGAAGAGGAAGTGGTTACAATCACCACATCCAGCTCGAGCTCAGCAGACAACAAATCAGAAGAGAACCGGATGACACCAGATCCCATTAATCCAGATGAAATCGAGGTAGACGTGAACTTCGAGCCAGATCCCACAGACCTCGTGCTCTCCAGCATTCCTGGGGGCGAACTGTTCGATCCCCGCAAACATCGCTTCTCCGAGGAGGAGCTGAAGCCGCAGCCTATGATCAAGAAGGCAAAGAAAGTGTTTGTGCCTGAGGATCAGAAGGATGATAAATACTGGCAGCGGAGGAAGAAGAACAATGTTGCAGCCAAACGATCACGGGATGCCAGGCGCCTGAAAGAGAATCAGATCACAGTTCGAGCGGCATTTCTGGAGAGAGAAAACTCAGCGCTCAGACAGGAAGTGGCAGAGTTGCGCAAGGACTTTGGGCGCTGCAAGAACACAGTGGCACGATATGAAGCCAAATACGGAGCGCTGTAAGGGACAATCGCAAACACGGAGCatttgcatataaaaaaaaacccACTGCCTGTAATAAACGAGGCAATAGACTGCTACTAGAGTATGTGATTAACAACTTTtgctttctcttctttttcaagTGGACCTGAAGAAGACGTCTGAGCAGTTATTGATTCATTTGCATTGTTGAAAGgcaataaatgaataatagttTGGAACAAAGAGGAGGAGACAAGATAGAAGCAGGTGAACGATTCAGACTGTAGAGCTAAGTGACGTTCATGTGCTTAGTAACCTGGTCAACAGCTCTTTTTCTTTCCGTATAATGCAACGGCATACCCAATATATTCATCTGAGCTTTGAAGTGCTTTACACCAATGTAGAAACAAAGGTCTTCCCCATCTGCTCTTGTTTACAAGTTTTACAATATCAAAGTAGTTCTAGGGAATAATGTGCACTGGAAGTCAACAGTCTGCATTTATAAATAATGACTTCATTTGTTTTCAGTGTACTTCCACATGTATGAGTGTGAACTGTAGAAGAGGCGATTGTTGAAATATGAGGAGTTTGTATTGCATTTTAAGAATTACAGATTAACCGAAACAACAAAACTGTTAGCaggaaatgtaaatatatcatgTCTGTGTGACAAAAACAATGGTTTCGTCTGTCTTTAACTTGACGTGAGCAGAAAACTTTAGATGCTGTCTGTCAAAGCAAGCCTGTAGATCTTTTAAAATCATACTTTGTTCACTTCAGGATGGCAGTTCGCCCTTTTCTGGGACTCATGGAGGTCAGTTTATGTACAGAAATAACACGCTGTACACGTGACCTGGTCTTGTATCTGTATTTAGGGCAAATCAAATGAAGTGCTTATATAAAGGTTTTCGTTTTCGTATGCATCATTTATCTTTTCAGATAACCATCAAATGTTTAACAAAAGTGGTTTTGCAGTGATCCATAAGTGTCTTGAGCAGCGTGACTGTTTATAAAAGCACTAGTGTGTTACATATCAGAAACTGAATTCAAACCTCTGCTTGCCACcttcctgcttttttttttattgtaggcaCATATTTAGTCTCTGTCCTTTTTTATCATCAGGGAAAGAAGATAAAGGGTCAGTTCTTAAGATTCACTATATGTCGTGTATTTTGCTCTGTGTATTGTTGTGAAGTAGGCTAGCAGTCTAATGTTGCAGTACTCATTGTGAGGcctgtttgtatttttttcatgtgtttttttttcagaatggcAGTTGCTGTAATGTGAGCTTGACCAAAGCTAATTGATTGAAACTCTGAAGCTTAGTTTTTGTGGCTAGTACACAATGACTTCACTTAAATCAGGTTTTACGATGTGCATATTTGCGGTCTGTACTAGAATCTCTTTACAAGCGCACCTTCAGTTTGACGTTTCTCTTCAAGCTTCCTAAGTGTAAGACGAGAAAGCAAACCAATGCAGGCTGATTTGAGAGGAACAGCGACTAACTCCATGAATCTTGGTTGAATATGTAATTTGTTCCTGTACAAAAAGTCTTTTTCTAATTGTCCGTTTtgaaaagtttttctttttggATTGTCTTTTAGATGTTTTTGACTTGTAAATGTTGAATGCCTTGGCTGTTTCATGTTGTACATATTATTAAAAAACTCTGATTTGTTTTA
>TCONS_00010199
CACTTGACAGTCAATTTACTCTTCATGTGAGAGACAGTTTGATTCTGATTAACCGTCTCCAGCACACTGCTTTTTTCCGGGTGTTGATCAACTGAAACCGTTCTGAGATGTCTTCAGAAATTCCGGAAATATTCAAAGCTCTGCTTGAGTACCCTTTCTCTCTCCCGTCGATAGATGATAACGaaAATGATAAAGAGAAGCTGTTTGAGAGTGTGGAGTCTGGAGGGGTCAGTGAAATGGGACCTTCAGCCGCCTTAACGCCAGCCATCTGGGAAAAGACCATCCCCTATGATGGAGACACCTTCCACCTGGAGTACATGGATCTGGAGGAGTTTCTGATGGAGAACGGCATTGCTGCTGCAGAGAATGAGCAAAAGAGCAGTGAGAAGGAAAACATACAGCTGACGGCCGAGGAACCATCCACAGCCTCTGCAGTTAAAACAGCCCCAGCAGTCACTCTGTTGCCTGTCATGGCACTGGATCCGTGTGAAGAGGAAGTGGTTACAATCACCACATCCAGCTCGAGCTCAGCAGACAACAAATCAGAAGAGAACCGGATGACACCAGATCCCATTAATCCAGATGAAATCGAGGTAGACGTGAACTTCGAGCCAGATCCCACAGACCTCGTGCTCTCCAGCATTCCTGGGGGCGAACTGTTCGATCCCCGCAAACATCGCTTCTCCGAGGAGGAGCTGAAGCCGCAGCCTATGATCAAGAAGGCAAAGAAAGTGTTTGTGCCTGAGGATCAGAAGGATGATAAATACTGGCAGCGGAGGAAGAAGAACAATGTTGCAGCCAAACGATCACGGGATGCCAGGCGCCTGAAAGAGAATCAGATCACAGTTCGAGCGGCATTTCTGGAGAGAGAAAACTCAGCGCTCAGACAGGAAGTGGCAGAGTTGCGCAAGGACTTTGGGCGCTGCAAGAACACAGTGGCACGATATGAAGCCAAATACGGAGCGCTTGGACCTGAAGAAGACGTCTGAGCAGTTATTGATTCATTTGCATTGTTGAAAGgcaataaatgaataatagttTGGAACAAAGAGGAGGAGACAAGATAGAAGCAGGTGAACGATTCAGACTGTAGAGCTAAGTGACGTTCATGTGCTTAGTAACCTGGTCAACAGCTCTTTTTCTTTCCGTATAATGCAACGGCATACCCAATATATTCATCTGAGCTTTGAAGTGCTTTACACCAATGTAGAAACAAAGGTCTTCCCCATCTGCTCTTGTTTACAAGTTTTACAATATCAAAGTAGTTCTAGGGAATAATGTGCACTGGAAGTCAACAGTCTGCATTTATAAATAATGACTTCATTTGTTTTCAGTGTACTTCCACATGTATGAGTGTGAACTGTAGAAGAGGCGATTGTTGAAATATGAGGAGTTTGTATTGCATTTTAAGAATTACAGATTAACCGAAACAACAAAACTGTTAGCaggaaatgtaaatatatcatgTCTGTGTGACAAAAA

Function

symbol description
tefa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cellular response to light stimulus and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in liver; midbrain hindbrain boundary; muscle; pleuroperitoneal region; and visual system. Orthologous to human TEF (TEF transcription factor, PAR bZIP family member).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-264 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cellular response to light stimulus and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in liver; midbrain hindbrain boundary; muscle; pleuroperitoneal region; and visual system. Orthologous to human TEF (TEF transcription factor, PAR bZIP family member).

Ensembl:

ensembl_id ENSDARG00000039117

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010198 False 2749 mRNA 0.42 4 19144833 19151708
TCONS_00010199 True 1482 mRNA 0.45 5 19145845 19153177

Neighbor

gene id symbol gene type direction distance location
XLOC_005311 aco2 coding downstream 25657 19106571 ~ 19119176 (-)
XLOC_005310 csdc2a coding downstream 41343 19099264 ~ 19103490 (-)
XLOC_005309 si:ch73-139e5.4 coding downstream 53619 19065679 ~ 19091214 (-)
XLOC_005308 rangap1b coding downstream 116765 19007926 ~ 19028068 (-)
XLOC_005307 chadlb coding downstream 136999 18989486 ~ 19007834 (-)
XLOC_005313 zc3h7bb coding upstream 5655 19158832 ~ 19185865 (-)
XLOC_005314 cdc42ep1a coding upstream 87433 19240610 ~ 19250854 (-)
XLOC_005315 si:ch211-141o9.10 coding upstream 119786 19272963 ~ 19282120 (-)
XLOC_005316 maff coding upstream 187609 19340786 ~ 19346678 (-)
XLOC_005317 shisa9a coding upstream 639104 19792281 ~ 19865585 (-)
XLOC_005303 AL772266.1 non-coding downstream 406304 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 690426 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 917103 18224534 ~ 18227730 (-)
XLOC_005291 NA non-coding downstream 1417293 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 1437932 17706792 ~ 17706901 (-)
XLOC_005318 NA non-coding upstream 903794 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 non-coding upstream 1035992 20189169 ~ 20189286 (-)
XLOC_005321 NA non-coding upstream 1161818 20314995 ~ 20334709 (-)
XLOC_005327 SLC16A6 non-coding upstream 1422463 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 2416606 21569783 ~ 21569899 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G113036 NA unknown CI01000020 null 4823772 ~ 4823786 (+)
tiger barb (Puntius tetrazona) G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding NC_056710.1 CM032079.1 8627094 ~ 8630207 (-)