G40810


Basic Information

Item Value
gene id G40810
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4675574 ~ 4676784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48297
aaaaaaaaaagaattttgtaatttattaacatATAGCATAATAAAAGGCTTTGAATTCCTTTCCTAATCAACCCTGTCTACTTCGCATATAAGAAAACTCCATGTTCTGCTATAGGGTGAAAATATGTACTTTATTTTGATCAAGGCTCCTTTCCCTCCGCTGTTCTTAGTTAGATCCTGATAATAAGATTACTCTGCACCATTTAACAACAGCAACCAAAACAACTATATTTCTgctttaatatgtaatattactttATGCATGTAGTCTTTCTTCCCATTTGAAATCTCCTTCCTGTCTGCTTTGGCCAGTTTTCATTGTTCAGTTTTATTGGGCATTCAGGATGTTCAGTGTAACCTACAGTTCATTTTGATGACACCTTTGAAGAGGAAGTCAGCTAATACCGGACATGAAACATCATGAACCTTGTTAACTACTTAAAGAGACAGTTCCAACTGATGCACCAGTGTCATATTTGAAGTGTATTTTCATGGCTTTTTCCAGTCTTATGCATATTCTTGAGCACAGAGTAGGTCTGATGCAGTGCTTATTTACTCATACTCATAGTGACCTCAGCCTAGTGGACGTTGTCACGCTTATGAACGGACGACATAAAATGACATTGATCTGGCTGTATTTTTCAattaatcaaagcaaagcaggcTGCAAACTGCGCCTTGTAAAAATATCAAATGGAgaaactacagcatcttcctacaataaaAGTAACcagataaaatatataaaagaatcCAAACGACATCACATCATATTCTCGTGAACAACTCAGAGACGGTGCCAAGGAGCAACAAAAACCAGGCGAAAGAAGTTGAGCTTTCATATGATAGCTAGTTTATATCTGTATACCAAAAGGAAGTCATATCTcattttgaattaaattattacaataattattacaaaattatttcCTTGTGTGCCTGATACTTTAGGAAGTAACAGTGTTTCTGTTATATTTTTGactagaaaaaagaaataaactggATTCTGGATATGAACTACTGATGCATTTACTGACGATGATGCTGGACCtttgaaagaaaatgtaaagtctAAAATATCTAAACAGAGGTATATTAACCAACTAATATAGCCAGCAAATACACTTCATTTTCAATTAAAGAGCTAACATTATAAAGACTGAACCtagcacatgtgtgtgtgcttttcatgGCCCCTTTTTGAACCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48297 True 1211 lncRNA 0.35 1 4675574 4676784

Neighbor

gene id symbol gene type direction distance location
tnip2 tnip2 coding upstream 175190 4495632 ~ 4500384 (+)
scpp1 LOC108262830 coding upstream 188299 4483548 ~ 4487275 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 834712 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 869745 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 962738 3700579 ~ 3712836 (+)
prmt9 prmt9 coding downstream 206212 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 923101 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 960083 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 1000396 5677180 ~ 5689962 (+)
LOC113542501 LOC108263484 coding downstream 1020422 5697206 ~ 5716038 (+)
G40809 NA non-coding upstream 100 4674968 ~ 4675474 (+)
G40808 NA non-coding upstream 824 4672663 ~ 4674750 (+)
G40807 NA non-coding upstream 3130 4672132 ~ 4672444 (+)
G40806 NA non-coding upstream 3673 4671628 ~ 4671901 (+)
G40805 NA non-coding upstream 4104 4670867 ~ 4671470 (+)
G40811 NA non-coding downstream 325 4677109 ~ 4678808 (+)
G40812 NA non-coding downstream 2305 4679089 ~ 4679533 (+)
G40813 NA non-coding downstream 2751 4679535 ~ 4680011 (+)
G40814 NA non-coding downstream 4936 4681720 ~ 4682740 (+)
G40815 NA non-coding downstream 7029 4683813 ~ 4684257 (+)
LOC113545357 NA other upstream 840948 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2584231 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 2678309 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3450973 1194219 ~ 1224601 (+)
trmo trmo other upstream 3486980 1165845 ~ 1188594 (+)
znf827 znf827 other downstream 586798 5263582 ~ 5357860 (+)
G41047 NA other downstream 641750 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 1218647 5895431 ~ 6228685 (+)
G42075 NA other downstream 2527166 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 2943761 7620545 ~ 7630140 (+)

Expression


Co-expression Network