G40825


Basic Information

Item Value
gene id G40825
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4703334 ~ 4703533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48312
GCCAATTCGCACACTCCAAATAAACACGTTGATAAAcacagtttgtgctacagtagctcttttgTGGGATCGGAACacatgggctagccttcactccccacacgcatcagcgAGACTTGGGAGCCCGTGatcctgtcgccagttcactggttgtccttccttggaccactgttgctaggtactaaccactgcataccggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48312 True 200 lncRNA 0.41 1 4703334 4703533

Neighbor

gene id symbol gene type direction distance location
tnip2 tnip2 coding upstream 202950 4495632 ~ 4500384 (+)
scpp1 LOC108262830 coding upstream 216059 4483548 ~ 4487275 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 862472 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 897505 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 990498 3700579 ~ 3712836 (+)
prmt9 prmt9 coding downstream 179463 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 896352 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 933334 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 973647 5677180 ~ 5689962 (+)
LOC113542501 LOC108263484 coding downstream 993673 5697206 ~ 5716038 (+)
G40819 NA non-coding upstream 14411 4688445 ~ 4688923 (+)
G40818 NA non-coding upstream 14973 4687982 ~ 4688361 (+)
G40817 NA non-coding upstream 16721 4685947 ~ 4686613 (+)
G40816 NA non-coding upstream 17572 4685524 ~ 4685762 (+)
G40815 NA non-coding upstream 19077 4683813 ~ 4684257 (+)
G40854 NA non-coding downstream 78798 4782331 ~ 4782530 (+)
G40863 arhgap10 non-coding downstream 89388 4792921 ~ 4802135 (+)
G40908 NA non-coding downstream 195958 4899491 ~ 4902619 (+)
G41006 NA non-coding downstream 375766 5079299 ~ 5079861 (+)
G41015 NA non-coding downstream 426587 5130120 ~ 5130386 (+)
LOC113545357 NA other upstream 868708 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2611991 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 2706069 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3478733 1194219 ~ 1224601 (+)
trmo trmo other upstream 3514740 1165845 ~ 1188594 (+)
znf827 znf827 other downstream 560049 5263582 ~ 5357860 (+)
G41047 NA other downstream 615001 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 1191898 5895431 ~ 6228685 (+)
G42075 NA other downstream 2500417 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 2917012 7620545 ~ 7630140 (+)

Expression


Co-expression Network