G40938 (nr3c2)


Basic Information

Item Value
gene id G40938
gene name nr3c2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4667206 ~ 4668993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48442
CTTGCCATGGTGTCAGAGACACAGCCTGGGGCTGGGTAGCCCTCCCCGCAGGCGGACAGTGGAGCCTGTGACAGGCCTGGGCGTGTTTTCCATGTCTCCATTAGCGCTGTAACTGGAGAAATTAGATTCAACAAGGAGTTTGTCTGGTCCCGCATGTCATGCCGCGAAAACGACATTGTTCCTTGCGCTCCGATCTGGTAATGAAATGAATGTCCACCTGAATTAACACCGACAATAGCTGACGTGGGCACGTTATTATTCTCTTGGTAATAGCTGCCATCATTGGTCTCCTGTTTAATCCCCTTGGGCATGTCATTGTTTGGAAACACACCAAACTCATAGTTGCCATTAAGAGAAGAAATGGGAGGTCCCAGGATCCCGGAGAGATTGTATTCATCAATATTATCCCTCAAGGACAAGTATGTAGTCTCTGTAGCTGGGAAGAGTCCCATGGGCTGCTGCGGTTCCCCATAGTGTGCATTTGTGCAAGTTGCTTCCCTGTTGGGCTCAGTCTTAATATGAGATGGAAATGGCGAAGGTGGCACATTGCCATTGCTGTTACCCAGACACATACTCCTGTATTCACCGTCAGGCTCATTTTTGATGTATTTGACCATCCCCATGGAGTCCAGGCCAACATTGAATATTTCCCCATCCAAGCTCTCCACTTTGGGGAACTTGAAGCCTTTAAAATCATGCTCTTGGCCATCGGGGCTGTGGATGTCATTCTGAACCAAGCCGAGACTGCTGGGAGGGCTTGACACAGAAAAGGTCCTGGAGGGGTTCCTGGGACTGGACATCGCGATGGAACCAACTGTGGGTGGACTAGACCCAGAAGGCCTCAAGTTACCACCACTTCCTGTGGGACTGGACACAGATGACCTCATGTTGTTGCTGCAGGACGGCGGTGTCCTTACACTTCCCATGCTCTGGGGGCTTGAGATGGGTGACTTCATCACATTAAAGGGGCTTGCTAGTGGTGGAGTACCCATAGTGCTGGACTCTGCTGGGCTGCAGGTGCTTGAGTTGACACGGTGAGTCTGTACCAGGCCTGAACCAACTGGACCCAGACTGGCTGGACTGCCTAGAGAAGGATGGCTAGTGCCAAAGTAGGTGGGACTGGTGGTGGAAGTCACAATGTTGTTTCCACTTGGGCTGGAAATGCTGCTGGAGTCTTCAGCAGGGCTGGACAGAACCGTGGCCAAGGTGGAAGATGTTGGCGCAGTGCCTACCCCACACTCGCCAAGACTACCATTCGGTAACTGGGACATAGTTGGGAATGATGTTGGAGGAGCTTTCATGTTGGGGCTCCTAGTAGTCCCTGACTGATTGTCCTCGATCCCTCTGCCACGCAGAGGGTACAGTTTTCCAGGGCTGCCCTGGCATCCGGCAGGTGGGCCCTGCTGGCTAAAGGCAAATTCAGCCTCCCTGGCAGCATTCATATACAAGCCCATAGATTCAGCAACAGTTTTGGAGAGCTCTTTAGAGTCTTCCGGTTTGCGGCTGTGGATGGAGTTGTTATATGCAGGGAAGCTGAGCTGCTGGTCAGGACTGAGCTGGGGCATCGGCATGTCAGCCTTCTTTCCTCTACTTTCCTTGCACTTCGGAGCTGGGACACTGGATGCATTACTCGCATTTACAATGTCCATCAGGACATCACTGTTCATCAGAGCTCCCCCCTCGTCTGTCATGCAGCACTGCTCCATAGATCCTGGCATCTGGGCCCATCTGTTTTCTCTGGCTGTACCTTCGTAAATACTTTGGTATCTTTTGGACTCCATGCCTGGA

Function

symbol description
nr3c2 Enables steroid hormone binding activity and steroid hormone receptor activity. Acts upstream of or within cellular response to cortisol stimulus and multicellular organismal response to stress. Predicted to be located in nucleus. Is expressed in several structures, including blood; eye; heart; liver; and pleuroperitoneal region. Used to study autism spectrum disorder. Human ortholog(s) of this gene implicated in autosomal dominant pseudohypoaldosteronism type 1 and pseudohypoaldosteronism. Orthologous to human NR3C2 (nuclear receptor subfamily 3 group C member 2).

NR:

description
PREDICTED: mineralocorticoid receptor isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48442 True 1788 lncRNA 0.52 1 4667206 4668993

Neighbor

gene id symbol gene type direction distance location
fam193a fam193a,LOC103156485 coding downstream 126583 4511701 ~ 4540623 (-)
sparcl1 LOC108262882 coding downstream 193908 4463696 ~ 4473298 (-)
LOC113542300 NA coding downstream 371077 4293496 ~ 4296129 (-)
LOC117596921 NA coding downstream 377767 4284375 ~ 4289439 (-)
LOC113542293 NA coding downstream 393039 4259731 ~ 4274167 (-)
arhgap10 arhgap10,LOC107742542 coding upstream 116780 4785773 ~ 4878809 (-)
ednraa ednra coding upstream 252795 4921788 ~ 4944595 (-)
pou4f2 pou4f2 coding upstream 409367 5078360 ~ 5081554 (-)
zgc:152968 LOC108262836 coding upstream 688548 5357541 ~ 5384816 (-)
mmaa mmaa,LOC102789515 coding upstream 722163 5391156 ~ 5401649 (-)
G40936 NA non-coding downstream 1481 4665522 ~ 4665725 (-)
G40770 NA non-coding downstream 127680 4538059 ~ 4539526 (-)
LOC117596430 NA non-coding downstream 170510 4488546 ~ 4496696 (-)
G40522 NA non-coding downstream 826046 3792229 ~ 3841160 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding upstream 70391 4739384 ~ 4739711 (-)
G40966 NA non-coding upstream 74734 4743727 ~ 4744074 (-)
G40979 NA non-coding upstream 96086 4765079 ~ 4769220 (-)
G40980 NA non-coding upstream 105351 4774344 ~ 4774653 (-)
G40992 NA non-coding upstream 140875 4809868 ~ 4811425 (-)
dclk2a LOC108263760,LOC108429594 other downstream 57756 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 1632653 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1633269 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1634403 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1683003 2220147 ~ 2984203 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 224909 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 534713 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1087024 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2492481 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2769911 7438904 ~ 7589663 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001359 nr3c2 coding NC_007112.7 CM002885.2 36935154 ~ 37087966 (-)
grasscarp (Ctenopharyngodon idella) CI01000049_04907578_04909938 NA coding CI01000049 null 4907445 ~ 4910923 (-)
bowfin (Amia calva) G99937 NA non-coding CM030132.1 CM030132.1 17802158 ~ 17803919 (-)
tiger barb (Puntius tetrazona) G4166 nr3c2,LOC107550687,LOC107670737,LOC107742541,LOC107654985 non-coding NC_056699.1 CM032068.1 18213305 ~ 18215084 (+)
tiger barb (Puntius tetrazona) G84236 LOC107751115,LOC107695065,LOC107556305,LOC107570979,LOC107737248,LOC107691280 unknown NC_056709.1 CM032078.1 23392564 ~ 23393723 (-)
mexican tetra (Astyanax mexicanus) G4401 NA non-coding NC_035897.1 CM008300.1 17347662 ~ 17348010 (+)