Gene
RNA
| Item | Value |
|---|---|
| gene id | G40966 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 4743727 ~ 4744074 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU48470 | True | 348 | lncRNA | 0.49 | 1 | 4743727 | 4744074 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fam193a | fam193a,LOC103156485 | coding | downstream | 203104 | 4511701 ~ 4540623 (-) |
| sparcl1 | LOC108262882 | coding | downstream | 270429 | 4463696 ~ 4473298 (-) |
| LOC113542300 | NA | coding | downstream | 447598 | 4293496 ~ 4296129 (-) |
| LOC117596921 | NA | coding | downstream | 454288 | 4284375 ~ 4289439 (-) |
| LOC113542293 | NA | coding | downstream | 469560 | 4259731 ~ 4274167 (-) |
| arhgap10 | arhgap10,LOC107742542 | coding | upstream | 41699 | 4785773 ~ 4878809 (-) |
| ednraa | ednra | coding | upstream | 177714 | 4921788 ~ 4944595 (-) |
| pou4f2 | pou4f2 | coding | upstream | 334286 | 5078360 ~ 5081554 (-) |
| zgc:152968 | LOC108262836 | coding | upstream | 613467 | 5357541 ~ 5384816 (-) |
| mmaa | mmaa,LOC102789515 | coding | upstream | 647082 | 5391156 ~ 5401649 (-) |
| G40962 | nr3c2,LOC107550687,LOC107742541,LOC107670737 | non-coding | downstream | 4016 | 4739384 ~ 4739711 (-) |
| G40938 | nr3c2 | non-coding | downstream | 74734 | 4667206 ~ 4668993 (-) |
| G40936 | NA | non-coding | downstream | 78002 | 4665522 ~ 4665725 (-) |
| G40770 | NA | non-coding | downstream | 204201 | 4538059 ~ 4539526 (-) |
| LOC117596430 | NA | non-coding | downstream | 247031 | 4488546 ~ 4496696 (-) |
| G40979 | NA | non-coding | upstream | 21005 | 4765079 ~ 4769220 (-) |
| G40980 | NA | non-coding | upstream | 30270 | 4774344 ~ 4774653 (-) |
| G40992 | NA | non-coding | upstream | 65794 | 4809868 ~ 4811425 (-) |
| LOC117596884 | NA | non-coding | upstream | 517117 | 5261191 ~ 5264789 (-) |
| G41114 | NA | non-coding | upstream | 533877 | 5277951 ~ 5281223 (-) |
| dclk2a | LOC108263760,LOC108429594 | other | downstream | 134277 | 4545139 ~ 4609450 (-) |
| trnah-gug_3 | NA | other | downstream | 1709174 | 3034482 ~ 3034553 (-) |
| trnah-gug_2 | NA | other | downstream | 1709790 | 3033866 ~ 3033937 (-) |
| trnae-uuc | NA | other | downstream | 1710924 | 3032732 ~ 3032803 (-) |
| tenm3 | tenm3,LOC108434131 | other | downstream | 1759524 | 2220147 ~ 2984203 (-) |
| tmem184c | tmem184c,LOC107742544,LOC107670728,LOC107654969 | other | upstream | 149828 | 4893902 ~ 4906239 (-) |
| lsm6 | lsm6 | other | upstream | 459632 | 5203706 ~ 5227967 (-) |
| gab1 | gab1 | other | upstream | 1011943 | 5756017 ~ 5819513 (-) |
| lef1 | lef1,LOC103361279 | other | upstream | 2417400 | 7161474 ~ 7204699 (-) |
| maml3 | maml3 | other | upstream | 2694830 | 7438904 ~ 7589663 (-) |
