G40992


Basic Information

Item Value
gene id G40992
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4809868 ~ 4811425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48496
GGAAAGTGtttgtgtattaaataaatgcatataaatagCAGTATACTGTGCAAAAtgaaatcaatatttggtgtgattcACCCTTGCCCTTTTAAAACTGAATCAGTTCTCTTGGTTATGTGGTCATGTGATTTTATAGCCAGGAAATTGGCTAGAAGGTTCTTTCAAGTGTCTTAAAATGGTCGCAATTGTTCTGCAGGTTTCTTATTTCCAGACAGCCTCAGTGAggatttcatgtgaaaagtgcTTACCTTTACTTTCTTAcctttacttacttactttctttttaagaGCATACAGAAATTTCTCTCTAACAGTTCATTTTTTGGAATCTACATTTTTAGACATCTAAAGTGATGTTTTCTACTGACACGCTAACAcggaaaatatgaaataaaagtgtaaaatttgTGATATAATATAGGATAAATACCCTCAAGAAACCTGTTcaacatgaaaaaataacacacaaaacaccatcAGTGCTAAATTTCTTTCCTCTTATAGTGTATTATCtgtttctctctctctctctctctctctctctctctctctctttctcttcaccccctgattggctgctggctTTTGCCATGTAGTCAGCCTTATTTCATACCTAAATCTGAGAAGTAACGATGTTTGATATATGCGAGCCACAGTATGATGTGCATACAAATCGCCAAATCCTCCTCAAATGTAAGTTATTATTGCAGGAATGTCTTTCACGACATCTCAGGAACAtcatattatactatatattttactCATTGCTCAGTTATAAtaatgctttttcttttatttaacataacatactatagCTTCATAGACAGTTACTGTACATCAGATGAAGTACTGAATTAAATTCCCTAGGTGAAAGTTAAATACCAAATGTACAAAGGTGATACCTTTAAGGGTCTCCTCCAAGTGTCAGACATTGTTTAGTACCTTTTAAGCTTTAGTACCTTTGTTCTGATAACATAGAGACGTGACGGTCGCACAAATAGATGACAGAAGAAAAAGCTCAGAAGCGTCTATACTTTGaatcaatgaatatgcaaatgaatatgCTAATCCTCGCCAATGGTAAACCAGGGTTGCATACTTgaacctgattggctgttatattttatgacacaaGATCTCTTTCCTGTCAGGTGTTCAGTACTATCTCAGATTTTCAGAAAGTGGTAAATTTCACACTTTGAGCTGTCTACAAATTAATGATTCATTCAAAAAAGCACATTTCATGTAAGTTTAGTATAAGTTTATAAAGTTTTATGAGTTGACTGTTTAAATTTCACCTCGGCTGTACGTGGTGTTTGTAGTTGTTTATTAATCAACACGCAGGAGCAGCAGAATCTTCAATAAAGTATACAGCATATCACCTACAGATGATTACTCTGGAGTATacacttcaattttttttccctctggtTAAAGTTGTAGCAAGTGTGGTGTTGAGGCAGCGACTACACAGGCGAGTAGATATGCACTGCTCTCTCAGGCTACAGCTTGCCAGACTGTTGATGGCCCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48496 True 1536 lncRNA 0.36 2 4809868 4811425

Neighbor

gene id symbol gene type direction distance location
fam193a fam193a,LOC103156485 coding downstream 269245 4511701 ~ 4540623 (-)
sparcl1 LOC108262882 coding downstream 336570 4463696 ~ 4473298 (-)
LOC113542300 NA coding downstream 513739 4293496 ~ 4296129 (-)
LOC117596921 NA coding downstream 520429 4284375 ~ 4289439 (-)
LOC113542293 NA coding downstream 535701 4259731 ~ 4274167 (-)
ednraa ednra coding upstream 110363 4921788 ~ 4944595 (-)
pou4f2 pou4f2 coding upstream 266935 5078360 ~ 5081554 (-)
zgc:152968 LOC108262836 coding upstream 546116 5357541 ~ 5384816 (-)
mmaa mmaa,LOC102789515 coding upstream 579731 5391156 ~ 5401649 (-)
smad1 smad1,LOC103023608,LOC107734580 coding upstream 592069 5403494 ~ 5433155 (-)
G40980 NA non-coding downstream 35215 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 40648 4765079 ~ 4769220 (-)
G40966 NA non-coding downstream 65794 4743727 ~ 4744074 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding downstream 70157 4739384 ~ 4739711 (-)
G40938 nr3c2 non-coding downstream 140875 4667206 ~ 4668993 (-)
LOC117596884 NA non-coding upstream 449766 5261191 ~ 5264789 (-)
G41114 NA non-coding upstream 466526 5277951 ~ 5281223 (-)
G41174 NA non-coding upstream 788559 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 1064676 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 1483807 6295232 ~ 6302088 (-)
dclk2a LOC108263760,LOC108429594 other downstream 200418 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 1775315 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1775931 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1777065 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1825665 2220147 ~ 2984203 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 82477 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 392281 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 944592 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2350049 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2627479 7438904 ~ 7589663 (-)

Expression


Co-expression Network