G41006


Basic Information

Item Value
gene id G41006
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5079299 ~ 5079861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48512
GGTGGGGTTGATTTTCATGGCATGTTGACAAGTTGATCCAGAAAAGAATACAACAATCAAAACAATTTCAACCTCTTCAATTTCGCCTTCATCCTTAGTCTAATATTATTCctcatataattaatataaaaagttttatttatggaTAATTTGTCCTCTTTTTTTGACGCGactttttcattcattactaTTTCATATATTTACCGTCCATCCTTAGCTCTTCTACACGGAAAATTGCCCAGAAACCAATTTGATTGAGGCTTTAGAGAGTCACACTCATCTGAAATCCTGACCATGTTAAATAtcaaaaggggaaaaacaaGGTCTTACTTGGTCCGGTCCTTTAAAAATGCCTCCACATCCTCTTTTGACGTGACAGTGATTTTGGTGTTTTCAGTCAGAGTGACAGTCTGCTTCAGTGCACGAGTCATGGATGATTcaggggaaaataaaaaaaaaagatgtgaggATAAGAAATGTTATACAAACAGTTCGTGAAGTCTTTTAAAAGAGtgaaactttattatttttttacacgcACGCTGAGTATTTCATGCGTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48512 True 563 lncRNA 0.35 1 5079299 5079861

Neighbor

gene id symbol gene type direction distance location
prmt9 prmt9 coding upstream 186920 4882996 ~ 4892379 (+)
tnip2 tnip2 coding upstream 578915 4495632 ~ 4500384 (+)
scpp1 LOC108262830 coding upstream 592024 4483548 ~ 4487275 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 1238437 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 1273470 3802564 ~ 3805829 (+)
si:dkey-27h10.2 NA coding downstream 520024 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 557006 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 597319 5677180 ~ 5689962 (+)
LOC113542501 LOC108263484 coding downstream 617345 5697206 ~ 5716038 (+)
LOC113542496 LOC108263485 coding downstream 638836 5718697 ~ 5729662 (+)
G40908 NA non-coding upstream 176680 4899491 ~ 4902619 (+)
G40863 arhgap10 non-coding upstream 277164 4792921 ~ 4802135 (+)
G40854 NA non-coding upstream 296769 4782331 ~ 4782530 (+)
G40825 NA non-coding upstream 375766 4703334 ~ 4703533 (+)
G40819 NA non-coding upstream 390376 4688445 ~ 4688923 (+)
G41015 NA non-coding downstream 50259 5130120 ~ 5130386 (+)
LOC117596903 NA non-coding downstream 139632 5219493 ~ 5222775 (+)
G41019 NA non-coding downstream 145087 5224948 ~ 5226428 (+)
G41026 NA non-coding downstream 178690 5258551 ~ 5308118 (+)
G41031 NA non-coding downstream 185040 5264901 ~ 5270195 (+)
nr3c2 nr3c2,LOC107598757 other upstream 307695 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 1244673 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2987956 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 3082034 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3854698 1194219 ~ 1224601 (+)
znf827 znf827 other downstream 183721 5263582 ~ 5357860 (+)
G41047 NA other downstream 238673 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 815570 5895431 ~ 6228685 (+)
G42075 NA other downstream 2124089 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 2540684 7620545 ~ 7630140 (+)

Expression


Co-expression Network