G41026


Basic Information

Item Value
gene id G41026
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5258551 ~ 5308118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48535
atttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcttgtgtgcgtgcgtgtgcttATCCCATTATCAGTAAATCAGCAATCAGCCTGACACACAGTTTGACCTGTGTTTGGGATTTTGTTTGGAGGAGTGTACCTCGGCTTCTGTGAGCTCCACTTACCCATAAACCTCTTCTCTTCATGTTTCACGTCCCGTCTCATAGTACTGGGAATTCCGACTCTATTCAGTGAGTCAGAGCTTTTGACTCAGCTCAcaaataagagtcgactcttttcaGTTCTAAACAGGACACAATTTTTGCCATCAATTGTTTCATGAAATCTTACTCTACCTTCAAATTGCATTTTATAAAGTCTGttcaaatatttgtaaaatCAGCAAGGCACTATAAATGTGGAAGAATCCCTGCGTTAAAGATTTTGTGCTGCTatgtctgtgcttcattaagaagatttGTTTCCCTTTTTCCTGGTAACTGACAAGTAACGCTGCTTCGTACACACAGCTcagagtcaaacacacacctctccattcacactaacaaacaGCTCAGATGCTGAAAAGAGGTTTTGATTGAAGCGTTGTAATTGAGTGACACAATGGCAAGAGTAACAGCATTTCCTACAGCTacaaaaaacagacttttttttacgCTGTGTGATTTCATTGGTCTTTTAACCCAATAAAATCTGGGCAGAATTCTATAACAGGCAGATCTAACAGTGTTATAacgtgtgttctccatgtcagttTATACGataaagatcctctaacgatagacctgcaattaaagaaaatgactaagCTCTGCTTACGTCATCAAGCAGCACGATCCGGAAATCAGCTCATGCAGAAAATGGGCtcgcataaacacaaacatcttCACAGTGAGCTTGAGGCAATAAAGATGGTTTTTATGCCACTGATTGGTGGAGGCATTATCCATCCGCGATTCCCGTGAGCGCagtatctcaagaacgagttgTTTAACGTtctgtaggatttatatggaattatcttCATAACCAGCcaaatgaactgattagattttggatccaaacagggtcaaggtcacagcaaggtcaaatgtctaaaatagtTTCTCTTCAATCGCTTCCTtcatgtttgaagtatattaTAAGGGTATTTCCagctactgtatttgtagctgtcccatgaGTTTCATGTCATCCTGTGCCATCcttttttagacaaaaaagatttttagattttagacgAACAGCAGTCACACTctgaaatttttattaaaaaatctgaCTCTTCCAGAACTGACTACTGGTCGCAACAGCACTAAATTGAGCACGTCACATCATGTGTTCTCAACTcacgaccaaagaattcttttacgatgTGTGGATTTCGTAAATTGTACAATGTAACGTCAGCTTAAAAGAATTGTTCACGAATGACAGATGTTTAAATCCGACCTTACCACGATACAGCTACTGCTATTTGGTGCATGTGACTTTCGCCTATAGAACGTTTACAGAGAAATTATTAATGCTTTATCAATGTGATTTCCACTAAAGCTGATAAGTTCATGGAAGTGAACTAGTCCTGAACCCTGTTTGGATCCAGCGGTTATAATATACACTACCAGCAAAACACTAATTGCATTACATTAAACACTGCCATGTTAATGTCCGTTATTTCACCTTTTGTGTTAACCTTTTAAATTGAGTTTAAAAATCCACAAAAGAACATTGGACAGACTAAGACTGTCTTCCATCACTATTTACTTATTTGCTCTCCTCATTTCCATTTATCCTTTGCTTCTTCTTTCGTGTGATCTGCACTAGGCACggctttctcattttttttccaatatgcATCACGCCAGGTCTGTGCTTCTGCATGCTGGGTCCAGAGCCGTGCAGCCACCGAGATTAAAATATCTCCATAGGCAGCCACGGATTAGCGTTACCTATTCATTTCACTTCTCAACATGCTGGCTAGAGAAAGAGCGGAGGACGAGGAGAGAAGGCTGACATGTTGGCATCgagattaaaatataaattcaaaaaGCAGTGGATTAAAACCTCTATTCATTCTGTGGCTTCTGGTGCACGGAGACCGAGAACACAGCATCCACTCTGAcgtacactcaccgtccactttaataggaacacctgtacacctgcacatttatgcagttatccgatcaaccaatcatgtggcagcagcacaatgcataaaatcatgcaggtacaggccaagggcttcagttaatgttcacatcaaacatcagaatggagaagacgtgtgatctctgtggctttaaccatggcatggttgttagtgccagatgggctggtttgagtatttctgaaactgctgatctcctgggattttcacacacaacagtctctagagtttacacagaatggtgcgaaaaacaaaaaaaaaacatcctgttagtctgaaacagcttgttgatgagGGATCAGAGGAGAGTGACCTGACTGctctgagctgccaggaaggat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48535 True 2531 lncRNA 0.32 2 5258551 5308118

Neighbor

gene id symbol gene type direction distance location
prmt9 prmt9 coding upstream 366172 4882996 ~ 4892379 (+)
tnip2 tnip2 coding upstream 758167 4495632 ~ 4500384 (+)
scpp1 LOC108262830 coding upstream 771276 4483548 ~ 4487275 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 1417689 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 1452722 3802564 ~ 3805829 (+)
si:dkey-27h10.2 NA coding downstream 291767 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 328749 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 369062 5677180 ~ 5689962 (+)
LOC113542501 LOC108263484 coding downstream 389088 5697206 ~ 5716038 (+)
LOC113542496 LOC108263485 coding downstream 410579 5718697 ~ 5729662 (+)
G41019 NA non-coding upstream 32123 5224948 ~ 5226428 (+)
LOC117596903 NA non-coding upstream 35776 5219493 ~ 5222775 (+)
G41015 NA non-coding upstream 128165 5130120 ~ 5130386 (+)
G41006 NA non-coding upstream 178690 5079299 ~ 5079861 (+)
G40908 NA non-coding upstream 355932 4899491 ~ 4902619 (+)
G41049 NA non-coding downstream 25266 5333384 ~ 5335565 (+)
G41232 NA non-coding downstream 510430 5818548 ~ 5819447 (+)
G41299 NA non-coding downstream 568030 5876148 ~ 5876422 (+)
LOC117596795 NA non-coding downstream 931249 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 952487 6260605 ~ 6263303 (+)
nr3c2 nr3c2,LOC107598757 other upstream 486947 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 1423925 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3167208 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 3261286 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 4033950 1194219 ~ 1224601 (+)
G41047 NA other downstream 10416 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 587313 5895431 ~ 6228685 (+)
G42075 NA other downstream 1895832 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 2312427 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 2341080 7649198 ~ 7671410 (+)

Expression


Co-expression Network