G41047


Basic Information

Item Value
gene id G41047
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5318534 ~ 5341750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48562
cttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagaatgagaataaGAGTCATGCATGCCCACTGCGCCACCTGGCCATTTGAAGGGGCTGCAATGTGCGATGACGGAATTTctctctgatttatttatttatcccctCGTTTATTTATCTCTCTCCCCCAGTTCCACTATGGGAGAGAGGGGAGGCGTGgagctgcattttaatttgACGCCAAGCCAAAGCACCTTCATCAGAAGGTtaattctgtctgtctccttgTGGAGTactgttccctctctctctttttcgcCTCTCTCAATCTccctttcctcttctttctgtctcaggACTATAAGTACCAGTGGGTTTCAGCAGACAGAGGCTGTGTCTGGGTGTGTTAAGTGTCTAACCAACATCAGACATGCAGCTTCAGGCTCTGAGAGACCTGGACAGTATTGTATGTAATTATTCAGGACTTGTACCGCAGTGTTGTTgatttccccattctgattggtcagatgttgactaattttctgtaacaggaaCTTTGTAACAGActctccacataaatggatatTATGTGTAGGAACTCTCAAAACAAGCCCAGTTCTGGAAAaatatcaatcagggtttgattataaaatatcacaaacttTGAACATTCAGGGGAGTACCATTAAGTGTGATATTAAAATATGGAAAGAAAGTCACTGACCTACTGACCGGGTCAAGAGGGCGTTAGTCAGAGAAGCTACCAAGGCCAAGGAAacatgctaccaccaccatgtttcactggagggatggtgttctcagggtgatgagcagtgttgggtttttgCCTAATGTAGAACTAcaactttggtctcatcagatcaGAGAAGCTTTATCCACATATTTGCTGAGaactaagaataaaaaaagcaatagcCCAGACATGAAATCTACTTGTCACAGGTGCCCGAGGTTGTTTGCAACTGATAAGAATGTAAATGCATACATccatatttaaattaaacttcCAACTACATATTTCATGATCACAGTGAAAGGATCTGatggttttctgtgaggagacattcatttggcatttttggaaggagtctccagtgtcagcactttgagagtttgcactttgtggttaCTTgttaatatgacaagctgcatgtttttcatattatcaacttcaacagagaggaaaaaaaaaagctggtgagggaatgtttatagctgctatatatatatgtatgctatatgtaagtgataacaggaactaacttgtgttctacagcattaaaagtaactacagtatgaacagattaaaaagtatgaagaatctttctttaataaaagaaactgCTGTAGTATTAGAGGAATGTATctcttcaggatgtgctgttataacagtaacactgctttgtgtcacacctcgtcattgattatttttctataacagcacacccccaagtattttattccttaaataaagcattgatgcctgcaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48562 True 1516 TUCP 0.40 2 5318534 5341750

Neighbor

gene id symbol gene type direction distance location
prmt9 prmt9 coding upstream 426155 4882996 ~ 4892379 (+)
tnip2 tnip2 coding upstream 818150 4495632 ~ 4500384 (+)
scpp1 LOC108262830 coding upstream 831259 4483548 ~ 4487275 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 1477672 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 1512705 3802564 ~ 3805829 (+)
si:dkey-27h10.2 NA coding downstream 258135 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 295117 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 335430 5677180 ~ 5689962 (+)
LOC113542501 LOC108263484 coding downstream 355456 5697206 ~ 5716038 (+)
LOC113542496 LOC108263485 coding downstream 376947 5718697 ~ 5729662 (+)
G41026 NA non-coding upstream 10416 5258551 ~ 5308118 (+)
G41031 NA non-coding upstream 48339 5264901 ~ 5270195 (+)
G41019 NA non-coding upstream 92106 5224948 ~ 5226428 (+)
LOC117596903 NA non-coding upstream 95759 5219493 ~ 5222775 (+)
G41015 NA non-coding upstream 188148 5130120 ~ 5130386 (+)
G41232 NA non-coding downstream 476798 5818548 ~ 5819447 (+)
G41299 NA non-coding downstream 534398 5876148 ~ 5876422 (+)
LOC117596795 NA non-coding downstream 897617 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 918855 6260605 ~ 6263303 (+)
G41345 NA non-coding downstream 962147 6303897 ~ 6304105 (+)
nr3c2 nr3c2,LOC107598757 other upstream 546930 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 1483908 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3227191 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 3321269 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 4093933 1194219 ~ 1224601 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 553681 5895431 ~ 6228685 (+)
G42075 NA other downstream 1862200 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 2278795 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 2307448 7649198 ~ 7671410 (+)
G42685 NA other downstream 3123997 8465747 ~ 8466312 (+)

Expression


Co-expression Network