G41232


Basic Information

Item Value
gene id G41232
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5818548 ~ 5819447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48780
GCCATGTCACACTTTTCAACAGTGCATTCATTAtaaatgatgattattattagaaaGCAGCCATTtgcatgtgcgtgtgcatgtgtgcgtgtgcgtgtgtgtgtgtgtactgaaaaGCAAGCGCATTTGAATacaactgagatttttttttcttctacttaCATAACGGCGCAACTTTTTTTCCGGCGGAGACTTTCTGAGCCAGCCCGAGCACACCACATCCCCTCCACTCATCTTCCCTCCGTGTCCCAGGCGCTTCTGGAGCCGTGTGATCTGCGGGAAGTGGACAGAGTCGCCGTGTGAGGAGGCGCTGAGGAGAACTACAGTGTAACCCGCTGAGGAGAACTACAGTGTAACCCGCTGAGCTCCAACACACGTACACGAAAATTAGCTTGAGTGGCTCCAGGCGCGTGCACTCCTCCAAACTCCTGCCTGCTAGTCTaactcctttttctttttcttttcgtTTTTCTTCTTGGGGAATAAAAAGAGCCTGTGTCAGTCTAAATGCACCCAGAAAGCGTAGAAACAGCTATTATCCGTGTATAGTGAGCCTCGACACTTGGAAAGTGGGAATAATCCGCTGTTTTTTCTCTTCACGCTCCAAGTTCTTCGACGAAAACGCGCTcggggttttatttttttgttttttaaactaaagCTAAATATCTCCAGCGCTTTTTTCCCTCAGTTTTCCCACACATGGTGGTTTTCTGGAGCTTTCCGAGCTCCAAGCCGCTCTTTCTCCAACTAGTTGCCCCAGTTTCGTCGACCTTGCCTCCAGTTTCGCTCGGTGACTGCCGCGCATAAACGTCGATACTTTTCCCTCAAAACTCAACCTCCCTCCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48780 True 850 lncRNA 0.48 3 5818548 5819447

Neighbor

gene id symbol gene type direction distance location
LOC113542482 NA coding upstream 67516 5733447 ~ 5751032 (+)
LOC113542496 LOC108263485 coding upstream 88886 5718697 ~ 5729662 (+)
LOC113542501 LOC108263484 coding upstream 102510 5697206 ~ 5716038 (+)
LOC113544150 NA coding upstream 128586 5677180 ~ 5689962 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding upstream 144420 5636867 ~ 5674128 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding downstream 24119 5843566 ~ 5857230 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding downstream 446483 6265930 ~ 6295477 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding downstream 507413 6326860 ~ 6371028 (+)
ucp1 ucp1,LOC107703842 coding downstream 556122 6375569 ~ 6383460 (+)
gprin3 LOC108262861 coding downstream 579447 6398894 ~ 6405603 (+)
G41049 NA non-coding upstream 482983 5333384 ~ 5335565 (+)
G41032 NA non-coding upstream 496157 5270315 ~ 5322391 (+)
G41026 NA non-coding upstream 510430 5258551 ~ 5308118 (+)
G41031 NA non-coding upstream 548353 5264901 ~ 5270195 (+)
G41019 NA non-coding upstream 592120 5224948 ~ 5226428 (+)
G41299 NA non-coding downstream 56701 5876148 ~ 5876422 (+)
LOC117596795 NA non-coding downstream 419920 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 441158 6260605 ~ 6263303 (+)
G41345 NA non-coding downstream 484450 6303897 ~ 6304105 (+)
G41600 NA non-coding downstream 699612 6519059 ~ 6552115 (+)
znf827 znf827 other upstream 460688 5263582 ~ 5357860 (+)
G41047 NA other upstream 476798 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1046944 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 1983922 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3727205 2025488 ~ 2091343 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 75984 5895431 ~ 6228685 (+)
G42075 NA other downstream 1384503 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1801098 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1829751 7649198 ~ 7671410 (+)
G42685 NA other downstream 2646300 8465747 ~ 8466312 (+)

Expression


Co-expression Network