G41299


Basic Information

Item Value
gene id G41299
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5876148 ~ 5876422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48872
gaagagactgaacaagctggttaggagagccagctctgtcctgggctgcccactggactctgtggaggtggtgggtgagaggaggatgttagccaagctgacatctattatgaacaacacctctcaccccctgtatgggactgtggagaccctgtgtagctctttcagcagcagactgCTACACCCCCAGTGTAGGAAGGAGCGCTACCGCAGGTCATTCATACCAGTGGCTGTCAGACTTTACAACACCGCATTACAGTAATGTTCAGATGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48872 True 275 lncRNA 0.46 1 5876148 5876422

Neighbor

gene id symbol gene type direction distance location
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 18918 5843566 ~ 5857230 (+)
LOC113542482 NA coding upstream 125116 5733447 ~ 5751032 (+)
LOC113542496 LOC108263485 coding upstream 146486 5718697 ~ 5729662 (+)
LOC113542501 LOC108263484 coding upstream 160110 5697206 ~ 5716038 (+)
LOC113544150 NA coding upstream 186186 5677180 ~ 5689962 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding downstream 389508 6265930 ~ 6295477 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding downstream 450438 6326860 ~ 6371028 (+)
ucp1 ucp1,LOC107703842 coding downstream 499147 6375569 ~ 6383460 (+)
gprin3 LOC108262861 coding downstream 522472 6398894 ~ 6405603 (+)
zgc:154142 LOC108262754 coding downstream 541840 6418262 ~ 6463985 (+)
G41232 NA non-coding upstream 56701 5818548 ~ 5819447 (+)
G41049 NA non-coding upstream 540583 5333384 ~ 5335565 (+)
G41032 NA non-coding upstream 553757 5270315 ~ 5322391 (+)
G41026 NA non-coding upstream 568030 5258551 ~ 5308118 (+)
G41031 NA non-coding upstream 605953 5264901 ~ 5270195 (+)
LOC117596795 NA non-coding downstream 362945 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 384183 6260605 ~ 6263303 (+)
G41345 NA non-coding downstream 427475 6303897 ~ 6304105 (+)
G41600 NA non-coding downstream 642637 6519059 ~ 6552115 (+)
G41651 NA non-coding downstream 708433 6584855 ~ 6585448 (+)
znf827 znf827 other upstream 518288 5263582 ~ 5357860 (+)
G41047 NA other upstream 534398 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1104544 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2041522 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3784805 2025488 ~ 2091343 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 19009 5895431 ~ 6228685 (+)
G42075 NA other downstream 1327528 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1744123 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1772776 7649198 ~ 7671410 (+)
G42685 NA other downstream 2589325 8465747 ~ 8466312 (+)

Expression


Co-expression Network