G41300


Basic Information

Item Value
gene id G41300
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5876101 ~ 5876391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48873
GTAAAGTCTGACAGCCACTGGTATGAATGACCTGCGGTAGCGCTCCTTCCTACACTGGGGGTGTAGcagtctgctgctgaaagagctacacagggtctccacagtcccatacagggggtgagaggtgttgttcataatagatgtcagcttggctaacatcctcctctcacccaccacctccacagagtccagtgggcagcccaggacagagctggctctcctaaccagcttgttcagtctcttcctgTCCCGCTCTGCGCTGCCTCCCACCCAGCAGACTACAGTGTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48873 True 291 lncRNA 0.56 1 5876101 5876391

Neighbor

gene id symbol gene type direction distance location
usp38 usp38 coding downstream 35331 5825410 ~ 5840770 (-)
hhip hhip,LOC107654904 coding downstream 343621 5498440 ~ 5532480 (-)
LOC113541269 NA coding downstream 391489 5470957 ~ 5484612 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding downstream 418921 5445363 ~ 5457180 (-)
smad1 smad1,LOC103023608,LOC107734580 coding downstream 442946 5403494 ~ 5433155 (-)
il15 NA coding upstream 353253 6229644 ~ 6243139 (-)
znf330 znf330 coding upstream 377132 6253523 ~ 6267711 (-)
elmod2 elmod2,LOC107594343 coding upstream 508209 6384600 ~ 6392522 (-)
herc3 herc3,LOC107684306,LOC107583224 coding upstream 673455 6549846 ~ 6583135 (-)
LOC113542150 LOC108263070 coding upstream 708394 6584785 ~ 6602144 (-)
G41174 NA non-coding downstream 274958 5599984 ~ 5601143 (-)
G41114 NA non-coding downstream 594878 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 611312 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 1064676 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 1101448 4774344 ~ 4774653 (-)
G41491 NA non-coding upstream 418841 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 495264 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 659313 6535704 ~ 6538550 (-)
G41768 NA non-coding upstream 800739 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 918188 6794579 ~ 6797620 (-)
gab1 gab1 other downstream 56588 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 648134 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 969862 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1266651 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2841548 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 1285083 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 1562513 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 2258250 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 2593595 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 2593967 8470358 ~ 8470429 (-)

Expression


Co-expression Network