G41345


Basic Information

Item Value
gene id G41345
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6303897 ~ 6304105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU48931
ctggttcctctcaaggtttcttcctcattttgtctcagggagtttttccttgccaacgttgcctctggcttgctcatgagggataaattcacatatttacaatatattttttgaatccatttatttctgtaaagctgctttgtgataatgtccattgttaaaagcactatacaaataaaatgaattgaatgactaaatatggagaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48931 True 209 lncRNA 0.33 1 6303897 6304105

Neighbor

gene id symbol gene type direction distance location
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding upstream 8420 6265930 ~ 6295477 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 446667 5843566 ~ 5857230 (+)
LOC113542482 NA coding upstream 552865 5733447 ~ 5751032 (+)
LOC113542496 LOC108263485 coding upstream 574235 5718697 ~ 5729662 (+)
LOC113542501 LOC108263484 coding upstream 587859 5697206 ~ 5716038 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding downstream 22755 6326860 ~ 6371028 (+)
ucp1 ucp1,LOC107703842 coding downstream 71464 6375569 ~ 6383460 (+)
gprin3 LOC108262861 coding downstream 94789 6398894 ~ 6405603 (+)
zgc:154142 LOC108262754 coding downstream 114157 6418262 ~ 6463985 (+)
fam13a fam13a coding downstream 161961 6466066 ~ 6546055 (+)
G41331 NA non-coding upstream 40594 6260605 ~ 6263303 (+)
LOC117596795 NA non-coding upstream 41466 6239367 ~ 6262431 (+)
G41299 NA non-coding upstream 427475 5876148 ~ 5876422 (+)
G41232 NA non-coding upstream 484450 5818548 ~ 5819447 (+)
G41049 NA non-coding upstream 968332 5333384 ~ 5335565 (+)
G41600 NA non-coding downstream 214954 6519059 ~ 6552115 (+)
G41651 NA non-coding downstream 280750 6584855 ~ 6585448 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding downstream 294598 6598703 ~ 6598967 (+)
G41654 NA non-coding downstream 297807 6601912 ~ 6602163 (+)
G41752 pkd2 non-coding downstream 358177 6662282 ~ 6702806 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 75212 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 946037 5263582 ~ 5357860 (+)
G41047 NA other upstream 962147 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1532293 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2469271 3831867 ~ 3834626 (+)
G42075 NA other downstream 899845 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1316440 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1345093 7649198 ~ 7671410 (+)
G42685 NA other downstream 2161642 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 2165519 8469624 ~ 8469881 (+)

Expression


Co-expression Network