G41951


Basic Information

Item Value
gene id G41951
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7016704 ~ 7016925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU49621
CCGACTTGTTGAGTACTGGTGGTTTTGCTTCAGAAGGAAGCTCGCACTCAGCAAATCAGGGGCCCAAGCACCACACCACACAGCAACCACTATACCGAGCAAAGGTCAAGATATACGTTAGAACATACTTGTACCAcagctcaaatctgattggtcagaagattttcattatttttctataacagcagctctgttagTAGTTCTAgatgtaattcaaatcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49621 True 222 lncRNA 0.42 1 7016704 7016925

Neighbor

gene id symbol gene type direction distance location
tbck tbck,LOC107757006,LOC107675790,LOC107594431,LOC107729351,LOC107684277 coding upstream 99049 6844872 ~ 6917655 (+)
dkk2 dkk2 coding upstream 221196 6779406 ~ 6795508 (+)
papss1 papss1 coding upstream 268640 6718851 ~ 6748064 (+)
abcg2d LOC108261237,LOC108262954,LOC108262959,LOC108441148 coding upstream 317185 6681141 ~ 6699519 (+)
ppm1k ppm1k,LOC108262962,LOC107706815,LOC107675910,LOC107594437,LOC107729359,LOC107684283 coding upstream 336418 6662378 ~ 6680286 (+)
sgms2a sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470 coding downstream 109862 7126787 ~ 7140910 (+)
LOC113544242 LOC108262960,LOC108429574,LOC103032979,LOC107594430 coding downstream 125513 7142438 ~ 7149125 (+)
hadh hadh,LOC107594428 coding downstream 133360 7150285 ~ 7155500 (+)
LOC113541438 mcub,LOC108262756 coding downstream 274796 7291721 ~ 7315462 (+)
LOC113542004 LOC108263504,LOC108263505,LOC108263506 coding downstream 326361 7343286 ~ 7346567 (+)
G41857 NA non-coding upstream 47865 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 313898 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 414541 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 417737 6598703 ~ 6598967 (+)
G41651 NA non-coding upstream 431256 6584855 ~ 6585448 (+)
G42093 NA non-coding downstream 331234 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding downstream 344275 7361200 ~ 7364931 (+)
G42208 NA non-coding downstream 405166 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 456445 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 624010 7640935 ~ 7644922 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 788019 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1658844 5263582 ~ 5357860 (+)
G41047 NA other upstream 1674954 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2245100 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 3182078 3831867 ~ 3834626 (+)
G42075 NA other downstream 187025 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 603620 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 632273 7649198 ~ 7671410 (+)
G42685 NA other downstream 1448822 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1452699 8469624 ~ 8469881 (+)

Expression


Co-expression Network