G42008


Basic Information

Item Value
gene id G42008
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7016765 ~ 7017405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU49679
TGATGCTTACACAATTATTTTCCCCCAAGCAGCACcgcccaaagtgttttattcctcttataccacaacaataattttttttaaatgtattaattaatgtaatgctttttaatcatttacatctacatttaatgttgtagaacctctgttgttccctcactagcctctcttttttcccctctcttgaagttaaaaagaatTCGCAGGTCTTCTATaatgaagactctcccatggtggaaaacttactgatcgttacaaagagctgacactggagactcctcttccataaatgttacctACATGACTCGTAACAGAagactttaccatatcaaccagtaaataacaacactttttttaaaactccgTTTTTTAtgattagacttagattatgtggatcgTCTACCATcaaagtctctgtgaatgagctattgctatagaaacaataatgtattagaacaagcacatttatattaaaaacctgtgatttgaattacatcTAGAACTActaacagagctgctgttatagaaaaataatgaaaatcttctgaccaatcagatttgagctgTGGTACAAGTATGTTCTAACGTATATCTTGACCTTTGCTCGGTATAGTGGTTGCTGTGTGGTGTGGTGCTTGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49679 True 641 lncRNA 0.35 1 7016765 7017405

Neighbor

gene id symbol gene type direction distance location
npnta npnt coding downstream 10731 6942697 ~ 7006034 (-)
aimp1a aimp1 coding downstream 172274 6824909 ~ 6844491 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding downstream 300502 6700324 ~ 6716263 (-)
LOC117596878 LOC108263069 coding downstream 356774 6643933 ~ 6659991 (-)
LOC113541261 LOC108263069 coding downstream 375143 6623469 ~ 6641622 (-)
gstcd gstcd,LOC107095855,LOC106602269 coding upstream 52 7017457 ~ 7119620 (-)
LOC113538928 LOC108261848,LOC108262968 coding upstream 301694 7319099 ~ 7325006 (-)
LOC113542008 LOC108261848,LOC108262968 coding upstream 307969 7325374 ~ 7338431 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding upstream 344510 7361915 ~ 7384163 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding upstream 612764 7630169 ~ 7646075 (-)
G41944 NA non-coding downstream 4459 7012093 ~ 7012306 (-)
G41938 NA non-coding downstream 75307 6941240 ~ 6941458 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding downstream 219145 6794579 ~ 6797620 (-)
G41768 NA non-coding downstream 336492 6677130 ~ 6680273 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding downstream 478215 6535704 ~ 6538550 (-)
LOC117596848 NA non-coding upstream 123694 7141099 ~ 7142302 (-)
G42173 NA non-coding upstream 296263 7313668 ~ 7315596 (-)
G42179 NA non-coding upstream 325062 7342467 ~ 7342681 (-)
G42315 NA non-coding upstream 419037 7436442 ~ 7438889 (-)
G42361 NA non-coding upstream 550966 7568371 ~ 7652220 (-)
gab1 gab1 other downstream 1197252 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1788798 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2110526 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2407315 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3982212 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 144069 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 421499 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1117236 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1452581 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1452953 8470358 ~ 8470429 (-)

Expression


Co-expression Network