G42093


Basic Information

Item Value
gene id G42093
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7348159 ~ 7393784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU49784
tttgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacagaagaaaggaaatgtattattaatattattattattaagaaatgccacagagagaaagaaagaaatgttataCATGCTACAGAaattaaagtgtaattttattgtgttttttttttaaacagcagaaTAGTAACACAGATCCCTGTGAACACctttattaaagaaatgagaagtAAGAATGGAATGAGgtgtaatatttatgcatattaaaatgtttctgtaaaataaacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49784 True 322 lncRNA 0.19 2 7348159 7393784

Neighbor

gene id symbol gene type direction distance location
LOC113542004 LOC108263504,LOC108263505,LOC108263506 coding upstream 1592 7343286 ~ 7346567 (+)
LOC113541438 mcub,LOC108262756 coding upstream 32697 7291721 ~ 7315462 (+)
hadh hadh,LOC107594428 coding upstream 192659 7150285 ~ 7155500 (+)
LOC113544242 LOC108262960,LOC108429574,LOC103032979,LOC107594430 coding upstream 199034 7142438 ~ 7149125 (+)
sgms2a sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470 coding upstream 207249 7126787 ~ 7140910 (+)
LOC113543274 LOC108263610 coding downstream 2641 7396425 ~ 7408116 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding downstream 19724 7413508 ~ 7420929 (+)
LOC113543305 LOC108262750 coding downstream 281452 7675236 ~ 7677859 (+)
htra3a LOC108263851 coding downstream 286985 7680769 ~ 7694527 (+)
LOC113543264 NA coding downstream 310665 7704449 ~ 7712546 (+)
G41951 NA non-coding upstream 331234 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 379320 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 645353 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 745996 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 749192 6598703 ~ 6598967 (+)
G42208 NA non-coding downstream 28307 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 79586 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 247151 7640935 ~ 7644922 (+)
G42304 NA non-coding downstream 327865 7721649 ~ 7721851 (+)
G42307 NA non-coding downstream 339658 7733442 ~ 7733655 (+)
G42075 NA other upstream 127136 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1119474 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1990299 5263582 ~ 5357860 (+)
G41047 NA other upstream 2006409 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2576555 4664316 ~ 4771604 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 226761 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 255414 7649198 ~ 7671410 (+)
G42685 NA other downstream 1071963 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1075840 8469624 ~ 8469881 (+)
sprn sprn other downstream 3158475 10552259 ~ 10558295 (+)

Expression


Co-expression Network