G42173


Basic Information

Item Value
gene id G42173
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7313668 ~ 7315596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU49878
gggggatgaatacttatgcaagagaCTGTACTTACAACAAGGCACAGTTCAGCACAGTCATTGGTAACtgcatgtaaataatattgGACACAATTATAAAGTAAAGGACAAAAGTATGCTTGAAGGACGCAAACTCCAGTATAAGTGCTTTATTTCAATAGCTGGTTGTTCCAAATAATGCATATAATATTCCAAATATGATGTTTTCTAAAAGTAGGCCATGAAATAATATCTGTAAACAGtattataaataacatcattatAAGGGTATAATGTTTAGGGAACTGCAGCATGACTGTTGGGCTTGATTTGTTCCACAGGCAGTTGGAGTTGATTTGGGTTCCTCAAACGTCTCAAGTCGTCCTCTACGAAGCCAGCTCGTCTTTGAGCGTGTTATATTTCTCCACGTTGAACTTCTGTTTTCTGACGCCTTTGTAGAAGTAATGCAGGAACTGCCTGTCTTTTGCATCTGGGTAAACGTAGTCCTGTGGGAGAGAATCccatatcatacattttaaacatcattaaaactGCTAAGATTTAGGCTTTAATAGGTATTACTGTTATTTGAAAACATTCCCACACAAACAGCTTCTATTATCATTCACGTGACCATTTGATCATATAAATCCACATACATAAGGCACCTAGCTTCAGTTTATCCCTGACTCTAACCCTCTGTGTCCGTCTTCTCTATCTAGGCCAGAAAGATCACAGCTCTGTATAGTTTAATATCAGACAAACATTTATCCCTTGAACAACTGCGTacagaagatcaggtttccatTTACTGTCTGTGACACTATATTTGACTTCCTCAATTATTTGACTTCCTTAATTCAACATAAATGACTGTGACATTAATGAGCTTAGGTGAAGTTAGCTAACGTTAGTCattggtgtttaatgattgACATGAGCGCCCCATAGTGATTCTTATTGTTTGACACAAAATTAATGTGTCTAATATGAGTCTAGTTATGATTataagattttatttctttacaaacatttttaataccAATCAATATAAACATTAGCATTTTAGCCTTTATCATGCAACCTTACTACTTAACACTGCATAAAAAGCACCATATTGTGTTGAGGTAAGTCAAATATACTCTAATGCCCACTTTATTAAGAATGAATAAGTTCATtcataaacatcagaatggggggaaaatgtgatatCAGTGACTTTGGTGGTCAGGGGAGAATGGCCGGACtgtttcaagctgacaggaaggatatggtaactcaaataaccactctctacaaccatggtgtgcagaaaagcatctcacaacacTCAAAACCACGTCAaacctggacagctgaagattggaaaaagaccaggtgaaaactattgtgcagttttatgtttgatgtgaacattaattgaagcatTTGAtgtgcatctgcatgattttatgcataccgttgctgccacatgattgtctgGGTTCAAGTTCTTCTCCTAGGTCACAATCCTCTCATTTCCTCATGGCCCTGAAACAGAAAGTTTTGATGGTTGGCATGTCTTTACCTGCTTGGTGAGAACGTAGTAGGCGTAGACCCCCATGCTGGTGGAGTAGGTGATGAAATAGGTGACAGGCTCCATGATGTCCCAGGAGTAAACCCACCACGTGAGCCAGCCCAGAGCTCCACCCTGCACCGACAGCAGAGCCAagcccacccagagagcacgtgAAGCCTTGTGCTCAGCTCTCACGTCAAGATGAACCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49878 True 1747 lncRNA 0.39 3 7313668 7315596

Neighbor

gene id symbol gene type direction distance location
gstcd gstcd,LOC107095855,LOC106602269 coding downstream 194048 7017457 ~ 7119620 (-)
npnta npnt coding downstream 307634 6942697 ~ 7006034 (-)
aimp1a aimp1 coding downstream 469177 6824909 ~ 6844491 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding downstream 597405 6700324 ~ 6716263 (-)
LOC117596878 LOC108263069 coding downstream 653677 6643933 ~ 6659991 (-)
LOC113538928 LOC108261848,LOC108262968 coding upstream 3503 7319099 ~ 7325006 (-)
LOC113542008 LOC108261848,LOC108262968 coding upstream 9778 7325374 ~ 7338431 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding upstream 46319 7361915 ~ 7384163 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding upstream 314573 7630169 ~ 7646075 (-)
zgc:153642 NA coding upstream 387056 7702652 ~ 7715901 (-)
LOC117596848 NA non-coding downstream 171366 7141099 ~ 7142302 (-)
G42008 NA non-coding downstream 296263 7016765 ~ 7017405 (-)
G41944 NA non-coding downstream 301362 7012093 ~ 7012306 (-)
G41938 NA non-coding downstream 372210 6941240 ~ 6941458 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding downstream 516048 6794579 ~ 6797620 (-)
G42179 NA non-coding upstream 26871 7342467 ~ 7342681 (-)
G42315 NA non-coding upstream 120846 7436442 ~ 7438889 (-)
G42361 NA non-coding upstream 252775 7568371 ~ 7652220 (-)
G42391 NA non-coding upstream 355991 7671587 ~ 7672864 (-)
G42392 NA non-coding upstream 359892 7675488 ~ 7675772 (-)
lef1 lef1,LOC103361279 other downstream 108969 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 1494155 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2085701 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2407429 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2704218 4545139 ~ 4609450 (-)
maml3 maml3 other upstream 123308 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 819045 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1154390 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1154762 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 1167707 8483303 ~ 8492983 (-)

Expression


Co-expression Network