scoca (scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340)


Basic Information

Item Value
gene id scoca
gene name scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7620545 ~ 7630140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50006
CCTCCGACCCCCCAGTGTGAGGACTTTGGCGTGTAGAGTCATCATTCCAGAGAGCCTTCGTGGGTGTTTTTCTTACCACGGAGAGATTGTTATTTTATCCAGAAGCTCACAGGCGCCGACTGTGACTCTGCAGCCCTGCGCCCTAGACCAGACGAGCAGCTCTCCACCATGAACTGTGACATGGATGGAGACATGGAGAATCAGGTTGAAGTGGAGGAGAAGACACGCCTCATTAACCAAGTGCTGGAGCTCCAACACACACTAGAAGATCTCTCTGCCCGAGTGGATGCTGTGAAGGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGCCAGTACATTGAGAACCTCATGTCAGCCTCGAGTGTGTTTCAGACCACTGACACCAAGAGCAAACGGAAATAAACACGTGGAGCATTGTCTTCATTCCCAACGGCTAGCTCATCCTTCCACAGAGGCCAGTATGCACCAATGTTCAGGCTTTCATACGTACACCCATGAGCTCTGAGTTTATTTTGTTCTATAAAAACTTATTTCACTCTTCGCCTCTGCATTCATTGCCTTATCGTCCTGGCAGGTTGTGGATAATGCTCATGCTGAGAGACATATGCTCTGTTAAAGAGGTCATTTTCATTCTGTGGTCAGATATCGACAGCATTAATGCACATCAGCTTCTCTGTAGGTCTTTTATTAGCTTCTCATCAACCCATTTGATAAAATAGTGCAGTCTTCTTTTTAAATACAGGGCAAACACAATTTTGTTTTAGTgacctgcttgttttttttttttttttactttgtcacTACATTATGATATGTTAAAGATGAAAGCGCAGACGAGACGTGCCGTGAACTCTGCAGCACAGGAAGATTAACCTGAACGTGCATGAGGTGCCATTATGTATTCTTCCAAAGAGACATGCATGATTTAAGAAGCTGATATTGATGATTATTGGCGAATGAATGGCAACGATGTAGAACTATCATGGACTATAAATTTATACTGTATTcagtttattttgcattaacaGTCAGAGATGGAGTTGATAAAAAGTCAGTAGAGGTAGTAGCTCCTCTACAGTTAAGGGGCTGTTTATAAATATTCAGGGGCCATAAGTGACATCCTACTTGGGCCCCATCAGACAAAGACAATGTCTTTATTGTCACATATGCAAATACAGTACAGTTacattcttttcttcgcatatcctaGCTTGGGTCCGCCATGATACAGCGCTCCtagagcagagagggttaagagccttgcaCAAAGGCCCAGTAATGGCAGTTTGGTCATTCTGGGCTTGAACCCACACCCTTCTGATTAGTAGCCCTgagctttaaccactgagccactacTGCCACCAGTATGCATGCTTGTTAGACATAGAATAGGCCTGTGCATCAGGATGTCAACTACTTTGCGTCACCAAGCCAGATACAATTTTCACACCACAAGGGGGCCTTCTATGTGAAATCCTGATACATGAGAACCATGAACTCAACATCTCCAAAAGATTTGTAGATctcaaaaaaattattacaatatatacactatatgaccaacagtatgtggacacctgaccatcaaacccacatcacacatcatacatgggccttctccaaacttttgccacataACTGGAAGCACATTGTGgtatagaatgtctttctatggtgtagcattaagatttcccttcactggaactaaggggaccaaacatgttctagcatgacaattcccctgtgcataaagcaagctccatgaagaaaGGGGTTGTGAAgtttttttggaaagagtcCAACTCCAACACTTTTGCGATGAACTGGAATATTGACTGTGTGCCAGACCTTCTCGCCCACGACATCACTAAAGCTCtggtggctgaatgggcaaaaatcccaacagccacgttccaaaatgtagtggaaagccctCCCAGAAGAGCAGAAGCTGTTATAAGGGTGTTATAATGCCcttggttttggaatgggatccACATGAGATGGTCAAGTGTTCACAAACTGTTGGCAATAGTGTAcgaattaaaaaacaaacaaacaaacaaaaaaaaattcattcttaCGGGGGCCCTAAGTGACTGCTTATAGAGCTAGAAGCCGCTCTGTGTGTTAGAGACGAGAAGACTGTTCCATAACTACCGAGGGTCACTTTCTTTCTTGATTGAGCAGATTTTTAAATAGATGCATGGTGGCTAATAAATGAGATCTAGGCTAGGTTATTTAGCAACTTCCCAAGTCAGATACTATCACACTAAATAGTTAAGGTAGTACTATTTAGACATAACTAGTTGCAGCAGTATGCGATTTGGGACACGATTTTTCCACAATACTGTCTTccagtttaatttttaagttaCAAATACAGACTGCTGCTTACAGAGAGACATTTCCTTTCACAAAGGAGCAGAAAGTACATCAGCTGTTGTCTTTGTTTCACAGATAACAGACAGCAACAGGAGTAAAACCCCTGTTTGGTTAGCGCTAGTTCTTGGACATTGACTTGCTATGTCAGGGCTGTTAATTTTTCACTGCTCTGTGCTCTGATTGTTTACTCTCATCTTATTCACTTTGTTTAACAGCatcttcaaaatgaataaatacaactGTAGCAAGAGGTGGAAAGAGAACAGTAGATTGCACTAACATTACAGTGAAGTGTAGAAAGGATGACTTGCTGGATACATGAAAGGACAGTGGAGATGAGGATGTGAGACGGCACTAATAAATGGACCGTCTGGCTTTTACAGTAAAAAGGGAAATAGCAGCCGTGTTGAGTGATATTGATCTGAGAGAGTACTCTGGATCCACGGGTGCATTTGATTTCTGCAAACCATGTAGACAAAGTAGAGCCGGGAAATAACAAGACAATAACTTTAGATACGTCTCCAACGCGGTCTCactaaataaacagattttagaGGTGCAGCGTATGAGTAAGGTAGAACTGATTAGATTAATGTAATTACATTTTCTGGACATTAATTAATGTAGAGATAGCAATGTTACAAGTGTGACACTTCACTGTGCAACATACAGAACTCAAGTCATAAACATGATAGAGCTTCATTGTTACAAAGGAATGGTCatgtattacattatttattattgtgttaatgTACTTTAATAATGTATATGAACATTTCTTCAGGTATTAACTTGAGGCTGCACACATCCAATGTAGATAAAGCCTTGCGTGTAAATTGTACTATTACA
>XM_026941427.2
AGGTGTGCCacgatagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaagtaagacaacaaaaaaatagGGGAGGTGCTTTAATGAACTATAGTGAATGCATTGATTTTGTGGGATCTGGgcgatacacacagacacacacacacacagaaaaatggAGGGGGAAGTGGACGACGAAGACGGGATGTTCACCAACATCTCTCTGGCTGATGACTCAGCCGACTGTGACTCTGCAGCCCTGCGCCCTAGACCAGACGAGCAGCTCTCCACCATGAACTGTGACATGGATGGAGACATGGAGAATCAGGTTGAAGTGGAGGAGAAGACACGCCTCATTAACCAAGTGCTGGAGCTCCAACACACACTAGAAGATCTCTCTGCCCGAGTGGATGCTGTGAAGGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGCCAGTACATTGAGAACCTCATGTCAGCCTCGAGTGTGTTTCAGACCACTGACACCAAGAGCAAACGGAAATAAACACGTGGAGCATTGTCTTCATTCCCAACGGCTAGCTCATCCTTCCACAGAGGCCAGTATGCACCAATGTTCAGGCTTTCATACGTACACCCATGAGCTCTGAGTTTATTTTGTTCTATAAAAACTTATTTCACTCTTCGCCTCTGCATTCATTGCCTTATCGTCCTGGCAGGTTGTGGATAATGCTCATGCTGAGAGACATATGCTCTGTTAAAGAGGTCATTTTCATTCTGTGGTCAGATATCGACAGCATTAATGCACATCAGCTTCTCTGTAGGTCTTTTATTAGCTTCTCATCAACCCATTTGATAAAATAGTGCAGTCTTCTTTTTAAATACAGGGCAAACACAATTTTGTTTTAGTgacctgcttgttttttttttttttttactttgtcacTACATTATGATATGTTAAAGATGAAAGCGCAGACGAGACGTGCCGTGAACTCTGCAGCACAGGAAGATTAACCTGAACGTGCATGAGGTGCCATTATGTATTCTTCCAAAGAGACATGCATGATTTAAGAAGCTGATATTGATGATTATTGGCGAATGAATGGCAACGATGTAGAACTATCATGGACTATAAATTTATACTGTATTcagtttattttgcattaacaGTCAGAGATGGAGTTGATAAAAAGTCAGTAGAGGTAGTAGCTCCTCTACAGTTAAGGGGCTGTTTATAAATATTCAGGGGCCATAAGTGACATCCTACTTGGGCCCCATCAGACAAAGACAATGTCTTTATTGTCACATATGCAAATACAGTACAGTTacattcttttcttcgcatatcctaGCTTGGGTCCGCCATGATACAGCGCTCCtagagcagagagggttaagagccttgcaCAAAGGCCCAGTAATGGCAGTTTGGTCATTCTGGGCTTGAACCCACACCCTTCTGATTAGTAGCCCTgagctttaaccactgagccactacTGCCACCAGTATGCATGCTTGTTAGACATAGAATAGGCCTGTGCATCAGGATGTCAACTACTTTGCGTCACCAAGCCAGATACAATTTTCACACCACAAGGGGGCCTTCTATGTGAAATCCTGATACATGAGAACCATGAACTCAACATCTCCAAAAGATTTGTAGATctcaaaaaaattattacaatatatacactatatgaccaacagtatgtggacacctgaccatcaaacccacatcacacatcatacatgggccttctccaaacttttgccacataACTGGAAGCACATTGTGgtatagaatgtctttctatggtgtagcattaagatttcccttcactggaactaaggggaccaaacatgttctagcatgacaattcccctgtgcataaagcaagctccatgaagaaaGGGGTTGTGAAgtttttttggaaagagtcCAACTCCAACACTTTTGCGATGAACTGGAATATTGACTGTGTGCCAGACCTTCTCGCCCACGACATCACTAAAGCTCtggtggctgaatgggcaaaaatcccaacagccacgttccaaaatgtagtggaaagccctCCCAGAAGAGCAGAAGCTGTTATAAGGGTGTTATAATGCCcttggttttggaatgggatccACATGAGATGGTCAAGTGTTCACAAACTGTTGGCAATAGTGTAcgaattaaaaaacaaacaaacaaacaaaaaaaaattcattcttaCGGGGGCCCTAAGTGACTGCTTATAGAGCTAGAAGCCGCTCTGTGTGTTAGAGACGAGAAGACTGTTCCATAACTACCGAGGGTCACTTTCTTTCTTGATTGAGCAGATTTTTAAATAGATGCATGGTGGCTAATAAATGAGATCTAGGCTAGGTTATTTAGCAACTTCCCAAGTCAGATACTATCACACTAAATAGTTAAGGTAGTACTATTTAGACATAACTAGTTGCAGCAGTATGCGATTTGGGACACGATTTTTCCACAATACTGTCTTccagtttaatttttaagttaCAAATACAGACTGCTGCTTACAGAGAGACATTTCCTTTCACAAAGGAGCAGAAAGTACATCAGCTGTTGTCTTTGTTTCACAGATAACAGACAGCAACAGGAGTAAAACCCCTGTTTGGTTAGCGCTAGTTCTTGGACATTGACTTGCTATGTCAGGGCTGTTAATTTTTCACTGCTCTGTGCTCTGATTGTTTACTCTCATCTTATTCACTTTGTTTAACAGCatcttcaaaatgaataaatacaactGTAGCAAGAGGTGGAAAGAGAACAGTAGATTGCACTAACATTACAGTGAAGTGTAGAAAGGATGACTTGCTGGATACATGAAAGGACAGTGGAGATGAGGATGTGAGACGGCACTAATAAATGGACCGTCTGGCTTTTACAGTAAAAAGGGAAATAGCAGCCGTGTTGAGTGATATTGATCTGAGAGAGTACTCTGGATCCACGGGTGCATTTGATTTCTGCAAACCATGTAGACAAAGTAGAGCCGGGAAATAACAAGACAATAACTTTAGATACGTCTCCAACGCGGTCTCactaaataaacagattttagaGGTGCAGCGTATGAGTAAGGTAGAACTGATTAGATTAATGTAATTACATTTTCTGGACATTAATTAATGTAGAGATAGCAATGTTACAAGTGTGACACTTCACTGTGCAACATACAGAACTCAAGTCATAAACATGATAGAGCTTCATTGTTACAAAGGAATGGTCatgtattacattatttattattgtgttaatgTACTTTAATAATGTATATGAACATTTCTTCAGGTATTAACTTGAGGCTGCACACATCCAATGTAGATAAAGCCTTGCGTGTAAATTGTACTATTACAAACTTGTgttaataaattgtttttgcttttgctta
>XM_026941437.2
CAACGGCTTCAGGTGTGCCacgatagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaagtaagacaacaaaaaaatagGGGAGGTGCTTTAATGAACTATAGTGAATGCATTGATTTTGTGGGATCTGGgcgatacacacagacacacacacacacagaaaaatggAGGGGGAAGTGGACGACGAAGACGGGATGTTCACCAACATCTCTCTGGCTGATGACTCAGCCGACTGTGACTCTGCAGCCCTGCGCCCTAGACCAGACGAGCAGCTCTCCACCATGAACTGTGACATGGATGACATGGAGAATCAGGTTGAAGTGGAGGAGAAGACACGCCTCATTAACCAAGTGCTGGAGCTCCAACACACACTAGAAGATCTCTCTGCCCGAGTGGATGCTGTGAAGGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGCCAGTACATTGAGAACCTCATGTCAGCCTCGAGTGTGTTTCAGACCACTGACACCAAGAGCAAACGGAAATAAACACGTGGAGCATTGTCTTCATTCCCAACGGCTAGCTCATCCTTCCACAGAGGCCAGTATGCACCAATGTTCAGGCTTTCATACGTACACCCATGAGCTCTGAGTTTATTTTGTTCTATAAAAACTTATTTCACTCTTCGCCTCTGCATTCATTGCCTTATCGTCCTGGCAGGTTGTGGATAATGCTCATGCTGAGAGACATATGCTCTGTTAAAGAGGTCATTTTCATTCTGTGGTCAGATATCGACAGCATTAATGCACATCAGCTTCTCTGTAGGTCTTTTATTAGCTTCTCATCAACCCATTTGATAAAATAGTGCAGTCTTCTTTTTAAATACAGGGCAAACACAATTTTGTTTTAGTgacctgcttgttttttttttttttttactttgtcacTACATTATGATATGTTAAAGATGAAAGCGCAGACGAGACGTGCCGTGAACTCTGCAGCACAGGAAGATTAACCTGAACGTGCATGAGGTGCCATTATGTATTCTTCCAAAGAGACATGCATGATTTAAGAAGCTGATATTGATGATTATTGGCGAATGAATGGCAACGATGTAGAACTATCATGGACTATAAATTTATACTGTATTcagtttattttgcattaacaGTCAGAGATGGAGTTGATAAAAAGTCAGTAGAGGTAGTAGCTCCTCTACAGTTAAGGGGCTGTTTATAAATATTCAGGGGCCATAAGTGACATCCTACTTGGGCCCCATCAGACAAAGACAATGTCTTTATTGTCACATATGCAAATACAGTACAGTTacattcttttcttcgcatatcctaGCTTGGGTCCGCCATGATACAGCGCTCCtagagcagagagggttaagagccttgcaCAAAGGCCCAGTAATGGCAGTTTGGTCATTCTGGGCTTGAACCCACACCCTTCTGATTAGTAGCCCTgagctttaaccactgagccactacTGCCACCAGTATGCATGCTTGTTAGACATAGAATAGGCCTGTGCATCAGGATGTCAACTACTTTGCGTCACCAAGCCAGATACAATTTTCACACCACAAGGGGGCCTTCTATGTGAAATCCTGATACATGAGAACCATGAACTCAACATCTCCAAAAGATTTGTAGATctcaaaaaaattattacaatatatacactatatgaccaacagtatgtggacacctgaccatcaaacccacatcacacatcatacatgggccttctccaaacttttgccacataACTGGAAGCACATTGTGgtatagaatgtctttctatggtgtagcattaagatttcccttcactggaactaaggggaccaaacatgttctagcatgacaattcccctgtgcataaagcaagctccatgaagaaaGGGGTTGTGAAgtttttttggaaagagtcCAACTCCAACACTTTTGCGATGAACTGGAATATTGACTGTGTGCCAGACCTTCTCGCCCACGACATCACTAAAGCTCtggtggctgaatgggcaaaaatcccaacagccacgttccaaaatgtagtggaaagccctCCCAGAAGAGCAGAAGCTGTTATAAGGGTGTTATAATGCCcttggttttggaatgggatccACATGAGATGGTCAAGTGTTCACAAACTGTTGGCAATAGTGTAcgaattaaaaaacaaacaaacaaacaaaaaaaaattcattcttaCGGGGGCCCTAAGTGACTGCTTATAGAGCTAGAAGCCGCTCTGTGTGTTAGAGACGAGAAGACTGTTCCATAACTACCGAGGGTCACTTTCTTTCTTGATTGAGCAGATTTTTAAATAGATGCATGGTGGCTAATAAATGAGATCTAGGCTAGGTTATTTAGCAACTTCCCAAGTCAGATACTATCACACTAAATAGTTAAGGTAGTACTATTTAGACATAACTAGTTGCAGCAGTATGCGATTTGGGACACGATTTTTCCACAATACTGTCTTccagtttaatttttaagttaCAAATACAGACTGCTGCTTACAGAGAGACATTTCCTTTCACAAAGGAGCAGAAAGTACATCAGCTGTTGTCTTTGTTTCACAGATAACAGACAGCAACAGGAGTAAAACCCCTGTTTGGTTAGCGCTAGTTCTTGGACATTGACTTGCTATGTCAGGGCTGTTAATTTTTCACTGCTCTGTGCTCTGATTGTTTACTCTCATCTTATTCACTTTGTTTAACAGCatcttcaaaatgaataaatacaactGTAGCAAGAGGTGGAAAGAGAACAGTAGATTGCACTAACATTACAGTGAAGTGTAGAAAGGATGACTTGCTGGATACATGAAAGGACAGTGGAGATGAGGATGTGAGACGGCACTAATAAATGGACCGTCTGGCTTTTACAGTAAAAAGGGAAATAGCAGCCGTGTTGAGTGATATTGATCTGAGAGAGTACTCTGGATCCACGGGTGCATTTGATTTCTGCAAACCATGTAGACAAAGTAGAGCCGGGAAATAACAAGACAATAACTTTAGATACGTCTCCAACGCGGTCTCactaaataaacagattttagaGGTGCAGCGTATGAGTAAGGTAGAACTGATTAGATTAATGTAATTACATTTTCTGGACATTAATTAATGTAGAGATAGCAATGTTACAAGTGTGACACTTCACTGTGCAACATACAGAACTCAAGTCATAAACATGATAGAGCTTCATTGTTACAAAGGAATGGTCatgtattacattatttattattgtgttaatgTACTTTAATAATGTATATGAACATTTCTTCAGGTATTAACTTGAGGCTGCACACATCCAATGTAGATAAAGCCTTGCGTGTAAATTGTACTATTACAAACTTGTgttaataaattgtttttgcttttgctta
>XM_026941445.2
GCGTCAGTATTACAGTAAAACTCCCTCCGACCCCCCAGTGTGAGGACTTTGGCGTGTAGAGTCATCATTCCAGAGAGCCTTCGTGGGTGTTTTTCTTACCACGGAGAGATTGTTATTTTATCCAGAAGCTCACAGGCGCCGACTGTGACTCTGCAGCCCTGCGCCCTAGACCAGACGAGCAGCTCTCCACCATGAACTGTGACATGGATGGAGACATGGAGAATCAGGTTGAAGTGGAGGAGAAGACACGCCTCATTAACCAAGTGCTGGAGCTCCAACACACACTAGAAGATCTCTCTGCCCGAGTGGATGCTGTGAAGGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGCCAGTACATTGAGAACCTCATGTCAGCCTCGAGTGTGTTTCAGACCACTGACACCAAGAGCAAACGGAAATAAACACGTGGAGCATTGTCTTCATTCCCAACGGCTAGCTCATCCTTCCACAGAGGCCAGTATGCACCAATGTTCAGGCTTTCATACGTACACCCATGAGCTCTGAGTTTATTTTGTTCTATAAAAACTTATTTCACTCTTCGCCTCTGCATTCATTGCCTTATCGTCCTGGCAGGTTGTGGATAATGCTCATGCTGAGAGACATATGCTCTGTTAAAGAGGTCATTTTCATTCTGTGGTCAGATATCGACAGCATTAATGCACATCAGCTTCTCTGTAGGTCTTTTATTAGCTTCTCATCAACCCATTTGATAAAATAGTGCAGTCTTCTTTTTAAATACAGGGCAAACACAATTTTGTTTTAGTgacctgcttgttttttttttttttttactttgtcacTACATTATGATATGTTAAAGATGAAAGCGCAGACGAGACGTGCCGTGAACTCTGCAGCACAGGAAGATTAACCTGAACGTGCATGAGGTGCCATTATGTATTCTTCCAAAGAGACATGCATGATTTAAGAAGCTGATATTGATGATTATTGGCGAATGAATGGCAACGATGTAGAACTATCATGGACTATAAATTTATACTGTATTcagtttattttgcattaacaGTCAGAGATGGAGTTGATAAAAAGTCAGTAGAGGTAGTAGCTCCTCTACAGTTAAGGGGCTGTTTATAAATATTCAGGGGCCATAAGTGACATCCTACTTGGGCCCCATCAGACAAAGACAATGTCTTTATTGTCACATATGCAAATACAGTACAGTTacattcttttcttcgcatatcctaGCTTGGGTCCGCCATGATACAGCGCTCCtagagcagagagggttaagagccttgcaCAAAGGCCCAGTAATGGCAGTTTGGTCATTCTGGGCTTGAACCCACACCCTTCTGATTAGTAGCCCTgagctttaaccactgagccactacTGCCACCAGTATGCATGCTTGTTAGACATAGAATAGGCCTGTGCATCAGGATGTCAACTACTTTGCGTCACCAAGCCAGATACAATTTTCACACCACAAGGGGGCCTTCTATGTGAAATCCTGATACATGAGAACCATGAACTCAACATCTCCAAAAGATTTGTAGATctcaaaaaaattattacaatatatacactatatgaccaacagtatgtggacacctgaccatcaaacccacatcacacatcatacatgggccttctccaaacttttgccacataACTGGAAGCACATTGTGgtatagaatgtctttctatggtgtagcattaagatttcccttcactggaactaaggggaccaaacatgttctagcatgacaattcccctgtgcataaagcaagctccatgaagaaaGGGGTTGTGAAgtttttttggaaagagtcCAACTCCAACACTTTTGCGATGAACTGGAATATTGACTGTGTGCCAGACCTTCTCGCCCACGACATCACTAAAGCTCtggtggctgaatgggcaaaaatcccaacagccacgttccaaaatgtagtggaaagccctCCCAGAAGAGCAGAAGCTGTTATAAGGGTGTTATAATGCCcttggttttggaatgggatccACATGAGATGGTCAAGTGTTCACAAACTGTTGGCAATAGTGTAcgaattaaaaaacaaacaaacaaacaaaaaaaaattcattcttaCGGGGGCCCTAAGTGACTGCTTATAGAGCTAGAAGCCGCTCTGTGTGTTAGAGACGAGAAGACTGTTCCATAACTACCGAGGGTCACTTTCTTTCTTGATTGAGCAGATTTTTAAATAGATGCATGGTGGCTAATAAATGAGATCTAGGCTAGGTTATTTAGCAACTTCCCAAGTCAGATACTATCACACTAAATAGTTAAGGTAGTACTATTTAGACATAACTAGTTGCAGCAGTATGCGATTTGGGACACGATTTTTCCACAATACTGTCTTccagtttaatttttaagttaCAAATACAGACTGCTGCTTACAGAGAGACATTTCCTTTCACAAAGGAGCAGAAAGTACATCAGCTGTTGTCTTTGTTTCACAGATAACAGACAGCAACAGGAGTAAAACCCCTGTTTGGTTAGCGCTAGTTCTTGGACATTGACTTGCTATGTCAGGGCTGTTAATTTTTCACTGCTCTGTGCTCTGATTGTTTACTCTCATCTTATTCACTTTGTTTAACAGCatcttcaaaatgaataaatacaactGTAGCAAGAGGTGGAAAGAGAACAGTAGATTGCACTAACATTACAGTGAAGTGTAGAAAGGATGACTTGCTGGATACATGAAAGGACAGTGGAGATGAGGATGTGAGACGGCACTAATAAATGGACCGTCTGGCTTTTACAGTAAAAAGGGAAATAGCAGCCGTGTTGAGTGATATTGATCTGAGAGAGTACTCTGGATCCACGGGTGCATTTGATTTCTGCAAACCATGTAGACAAAGTAGAGCCGGGAAATAACAAGACAATAACTTTAGATACGTCTCCAACGCGGTCTCactaaataaacagattttagaGGTGCAGCGTATGAGTAAGGTAGAACTGATTAGATTAATGTAATTACATTTTCTGGACATTAATTAATGTAGAGATAGCAATGTTACAAGTGTGACACTTCACTGTGCAACATACAGAACTCAAGTCATAAACATGATAGAGCTTCATTGTTACAAAGGAATGGTCatgtattacattatttattattgtgttaatgTACTTTAATAATGTATATGAACATTTCTTCAGGTATTAACTTGAGGCTGCACACATCCAATGTAGATAAAGCCTTGCGTGTAAATTGTACTATTACAAACTTGTgttaataaattgtttttgcttttgctta

Function

symbol description
scoca Predicted to be involved in positive regulation of macroautophagy and regulation of protein complex stability. Predicted to be located in Golgi membrane and cytosol. Predicted to colocalize with trans-Golgi network. Is expressed in neural keel and neural plate. Orthologous to human SCOC (short coiled-coil protein).
scoc Involved in positive regulation of macroautophagy and regulation of protein complex stability. Located in Golgi apparatus and nucleoplasm. Colocalizes with endosome and trans-Golgi network.

NR:

description
PREDICTED: short coiled-coil protein isoform X1

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component

KEGG:

id description
K20316 SCOC; short coiled-coil protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU50006 False 3243 lncRNA 0.41 4 7624869 7630105
XM_026941427.2 False 3381 mRNA 0.41 4 7620555 7630140
XM_026941437.2 True 3388 mRNA 0.41 4 7620545 7630140
XM_026941445.2 False 3301 mRNA 0.41 4 7624846 7630140

Neighbor

gene id symbol gene type direction distance location
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 199616 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 212429 7396425 ~ 7408116 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding upstream 227298 7384072 ~ 7393247 (+)
LOC117596353 LOC108263508 coding upstream 261984 7356734 ~ 7358561 (+)
LOC113541239 NA coding upstream 263852 7354068 ~ 7356693 (+)
LOC113543305 LOC108262750 coding downstream 45096 7675236 ~ 7677859 (+)
htra3a LOC108263851 coding downstream 50629 7680769 ~ 7694527 (+)
LOC113543264 NA coding downstream 74309 7704449 ~ 7712546 (+)
LOC117596357 NA coding downstream 85900 7716040 ~ 7735909 (+)
gpr78a NA coding downstream 119496 7749636 ~ 7755159 (+)
LOC117596850 NA non-coding upstream 145505 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 198249 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 226761 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding upstream 255614 7361200 ~ 7364931 (+)
G41951 NA non-coding upstream 603620 7016704 ~ 7016925 (+)
G42295 NA non-coding downstream 10795 7640935 ~ 7644922 (+)
G42304 NA non-coding downstream 91509 7721649 ~ 7721851 (+)
G42307 NA non-coding downstream 103302 7733442 ~ 7733655 (+)
G42442 NA non-coding downstream 236535 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 279284 7909424 ~ 7909698 (+)
G42075 NA other upstream 399522 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1391860 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 2262685 5263582 ~ 5357860 (+)
G41047 NA other upstream 2278795 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2848941 4664316 ~ 4771604 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 19058 7649198 ~ 7671410 (+)
G42685 NA other downstream 835607 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 839484 8469624 ~ 8469881 (+)
sprn sprn other downstream 2922119 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2964434 10594574 ~ 10608704 (+)

Expression


Co-expression Network