G42304


Basic Information

Item Value
gene id G42304
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7721649 ~ 7721851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50029
TTAATCACTTTTAACTTTAAATTCAAAATACATTGTACAGATAAATCCCCACTATTTACATTCACTCCTCATTAATTTCCATCATAGAGCTCGGTGAACCAATGCTACATTTTGATAATCAGGCATCAGGTCTTACAAAGTGAACAGGAGCAATACACAACGTTATACACAACAATAGTTTGTTAAATACACAGTGTATTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50029 True 203 lncRNA 0.32 1 7721649 7721851

Neighbor

gene id symbol gene type direction distance location
LOC113543264 NA coding upstream 9103 7704449 ~ 7712546 (+)
htra3a LOC108263851 coding upstream 27122 7680769 ~ 7694527 (+)
LOC113543305 LOC108262750 coding upstream 43790 7675236 ~ 7677859 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 300720 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 313533 7396425 ~ 7408116 (+)
gpr78a NA coding downstream 27785 7749636 ~ 7755159 (+)
cpz LOC108263841,LOC108434808 coding downstream 35759 7757610 ~ 7771338 (+)
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding downstream 347970 8069821 ~ 8080290 (+)
paip2b paip2b,LOC108263850,LOC107551309,LOC107674237,LOC103039606,LOC105904045 coding downstream 719934 8441785 ~ 8445916 (+)
dok1a LOC108262454 coding downstream 726806 8448657 ~ 8452951 (+)
G42295 NA non-coding upstream 76727 7640935 ~ 7644922 (+)
LOC117596850 NA non-coding upstream 246609 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 299353 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 327865 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding upstream 356718 7361200 ~ 7364931 (+)
G42307 NA non-coding downstream 11591 7733442 ~ 7733655 (+)
G42442 NA non-coding downstream 144824 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 187573 7909424 ~ 7909698 (+)
G42522 NA non-coding downstream 453634 8175485 ~ 8176073 (+)
G42531 NA non-coding downstream 468179 8190030 ~ 8190247 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 50239 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 91509 7620545 ~ 7630140 (+)
G42075 NA other upstream 500626 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1492964 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 2363789 5263582 ~ 5357860 (+)
G42685 NA other downstream 743896 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 747773 8469624 ~ 8469881 (+)
sprn sprn other downstream 2830408 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2872723 10594574 ~ 10608704 (+)
dntt dntt other downstream 3377742 11099593 ~ 11207862 (+)

Expression


Co-expression Network