G42391


Basic Information

Item Value
gene id G42391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7671587 ~ 7672864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50124
ATTTATGGTTTTTCATTctttgagttgtttttttattacaaaaaaaattcattatcATACAACAAACTCATCATTCCACATTGAAAACGAAGTAGGGgcaagagagagtgtgttaaaggaatactccagtacCACATGTGCGATTATCACAGACAAGAATTGCAATGTGTTTCTCTGAACCTGCTTACGAGAAACTCACTTGTAACAAAAGACTAAGGGTAGTCGCTGAATTCGGTTAAGAAACTGAGTGGAGTGCTTTCATGAATTCTTTAGTCAAATGAATCTGTTAATAAGAATTGTCCTATAAGAGAAAATGTGTGGCAAGTTGTTACCACAACCACACATTAGTGGTTCTGATCGCACTTGAATTACACAAAACCTTCAGAAAAGTAaccaaaatgacattttactgtattgctccaACATTGGAAATATTTCCTCATGTCTGCCTGACTtgtaaatgttgttgttttgaagTAATTTTTCTCAGTCACACGGTAAACAGCAGTCAGTAGATGAGAGGGCTAATATTTCTCAGATGTGCACAAAGCAACTGGAAGAAGGCAAAAGTCTGGTGTGCTACTTAATAAAAATCagctcctccttttttttttttaccaaccgAAGAGACTACATTCCTGCCTACTTGTTTTCTGTTGGCTTACAAGACCAAGGctcatgaattcacaggtcaaagttcacctacaTAACATTGGCACAAAGTAACCACAACTATGCATTTTTCACATTCtgcatcctttccccttcagtgaattgtcTTTATCCATGGGTGAATTTTGTCTGATTGCTTCTATCAGGAATATCTCCAGTTTTCAGTATATCTCCAGTATCACCATAGTAAGGagttaaaaatcacaaatgctACGACTAAACTGTAAATGCTGGCACCTCTGAATTACTGATGGAATTTAACAATTGACTTGAGTTTTGTGTCAACAGGTTTTCCATTCTGCAGAGAAACGTCAAAATTCTTGCCCGTGGCAATCGAACATGCGCTATTGATGTGGTAGATGGGTTGAAAATGCTGGAGTATCCCTTTAAGGAGAGCGATCAAAGCAAGAGAGAAGAGAGCAGATTTACCTTTAAGATTTCACAAGGTTGCTGATTACGCTCTACCACCGCTGCTGGTCTAATCGCTTTAAATGAATAACAGGGAGCACTTGCTGATTGAGACTCTGATTTTGAGGTCCTAGAAACTACCTTCAAATTAGCTCCCCTTAGCCAAACCTCAGTGACAACGAAGTATAAAAGATGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50124 True 1278 lncRNA 0.38 1 7671587 7672864

Neighbor

gene id symbol gene type direction distance location
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding downstream 25512 7630169 ~ 7646075 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding downstream 287424 7361915 ~ 7384163 (-)
LOC113542008 LOC108261848,LOC108262968 coding downstream 333156 7325374 ~ 7338431 (-)
LOC113538928 LOC108261848,LOC108262968 coding downstream 346581 7319099 ~ 7325006 (-)
gstcd gstcd,LOC107095855,LOC106602269 coding downstream 551967 7017457 ~ 7119620 (-)
zgc:153642 NA coding upstream 29788 7702652 ~ 7715901 (-)
hmx4 LOC108262851 coding upstream 150266 7823130 ~ 7825476 (-)
hmx1 LOC108262852 coding upstream 153770 7826634 ~ 7829546 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding upstream 234364 7907228 ~ 7909974 (-)
LOC117596360 NA coding upstream 380630 8053494 ~ 8069324 (-)
G42361 NA non-coding downstream 19367 7568371 ~ 7652220 (-)
G42315 NA non-coding downstream 232698 7436442 ~ 7438889 (-)
G42179 NA non-coding downstream 328906 7342467 ~ 7342681 (-)
G42173 NA non-coding downstream 355991 7313668 ~ 7315596 (-)
LOC117596848 NA non-coding downstream 529285 7141099 ~ 7142302 (-)
G42392 NA non-coding upstream 2624 7675488 ~ 7675772 (-)
G42394 LOC108262750 non-coding upstream 4233 7677097 ~ 7678945 (-)
G42395 NA non-coding upstream 7956 7680820 ~ 7681430 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding upstream 14433 7687297 ~ 7687689 (-)
G42400 NA non-coding upstream 17847 7690711 ~ 7691027 (-)
maml3 maml3 other downstream 81924 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 466888 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 1852074 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2443620 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2765348 4893902 ~ 4906239 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 461777 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 797122 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 797494 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 810439 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 1082050 8754914 ~ 8783798 (-)

Expression


Co-expression Network