G42394 (LOC108262750)


Basic Information

Item Value
gene id G42394
gene name LOC108262750
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7677097 ~ 7678945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50127
ATCACTCCAGCATAATCAGGAGATATTTGGCATTTATTTCTTTGATTAATGCAGATCACAACAATGATTTcaccaaaaataaaatccatacAATTTTCTCTTTACTGCAAATGTAATGAATCAGCCAAgacacattttttgttgttgttgtttttggttttgactAACGTGCTGAAAAAGCCATTTCTCTGAAGGGGAAATGctgactttatctaggtgatTTTTGTGCTGACACATGTATATGTCAGTGGACATTCCTTCAAAAGTACAAATACAGCAAACATTTTGAAGAGATGACAGCAGTGGTGCAATTTTTAAACAGAGTCCAAAAAGTCTTTCTGAAAGCAGCTTTAGACCAGCAGTTTGCACAAAATCTGAACTGGCATCAATAAGTTGGACCAACCCGCCCACTTCCGTACAAGTTTTACCAATCTCGCGTGTTCAACTAAAgacgagtgaatgaatgaatgaatgaatgaatgaatgcaataAAAGCATCGCACAGTGCCACGTGAGCAACCAGTACCCTCctgtgttaatgaacatggcttTTCTTTGTCCTGCGAGTTTCACATATCATCGCCCGCACCCACTcacatgaaatgtttttgttgggTACAATGGGATCCAAGTCCTGATGCACATCTGTAAAACTCTGTAGCAAACCTCAAAACATCATAGATGCATTGCCTGATTTGGGGGTGAGGGATAAATTTCATCTTTGGCCAAACTACAAGACCTGTTAAAAGGTTTGAGCCAAGGTTAAAggttattttatattgttaagAGACATGATCCATATCAATTTGACTAAAGTCTTTTGAATGGCAAGTTGAAAGACATGAatttacagaaacaaaacatacaaGAGGCTTCTGTGATATGAAAATCTCAAAGGTCAATAACAGCAATGCTCTATTTAGCTAACTCAACTCATTTCtacattacagcattacagctaAACTATTATGCTGGCTATTTAGCTGATATGATTGTGCAAATTGCAAAGGCAGTTGATTCAATTACACTGTTCTTGATGCCCAGGGCTAGTGCAATTCTCTTTCCTCTGATGGAATGCAGGTGTTTTGCATTTCACAGTCTTGATGAGAAATCAACAAGGATGTGttaaaaacagtcctgaagtgTAGAGGAAGTCTGGAATAAAAGATTGCCAGTATGTCCTCATTTCACCCGTCATCCCTCCATCAGCAGTTGCAAGTCCATTTCccctttttctcttcctcaggGTTGGCTTTTGGAGTAAGTTTAATACTCTTGACTGCCTCTGCTTCTTTCCCTCGTTGCCTACTTATCTGCTGTACCAGTTTGTTGAAGATGGTGTCCAACTGCTCTCTGCTGCCACCTTTAGCTGAATAAAGGTAGAAGGGCATTGAGTGGACCTCGGCTAAGTGCCGTGCTTGCTCGATGGTTGAGGCCACCCTAAAGGTCACCAAGTCGGCCTTGTTAGCCACAAGCACGCGAGGCACATCTGGTCCAAGCGAGTGCTGCTGACACTCCTCCATCCAGAGGGGCAGACTGCAGAACGAAGCCGCATTAGTGACGTCATAGACAAAGACGACTGCGTGTACGTTGCGGTAGTAGTGCTGTACCATGCTCTTCCGAAAACGCTCCTGACCCGCC
>TU50130
CTATGATTGAGTGAGACTTTTCAGAATAAATTAGTCAGAGACTGAGACAAAACAGTCTGTGTGCCAAAATAAACTGGTATATTAGTTCAAGCAAGTACTGAGCAACAACCTTTCGCATCATCAATACTGCAGTAGTGACTAAATAATTTCAAGCAGAACAACTGAATGAGTTTAACAGATCAATGACATGATACGATATGATGTGTCCATCACTCCAGCATAATCAGGAGATATTTGGCATTTATTTCTTTGATTAATGCAGATCACAACAATGATTTcaccaaaaataaaatccatacAATTTTCTCTTTACTGCAAATGTAATGAATCAGCCAAgacacattttttgttgttgttgtttttggttttgactAACGTGCTGAAAAAGCCATTTCTCTGAAGGGGAAATGctgactttatctaggtgatTTTTGTGCTGACACATGTATATGTCAGTGGACATTCCTTCAAAAGTACAAATACAGCAAACATTTTGAAGAGATGACAGCAGTGGTGCAATTTTTAAACAGAGTCCAAAAAGTCTTTCTGAAAGCAGCTTTAGACCAGCAGTTTGCACAAAATCTGAACTGGCATCAATAAGTTGGACCAACCCGCCCACTTCCGTACAAGTTTTACCAATCTCGCGTGTTCAACTAAAgacgagtgaatgaatgaatgaatgaatgaatgaatgcaataAAAGCATCGCACAGTGCCACGTGAGCAACCAGTACCCTCctgtgttaatgaacatggcttTTCTTTGTCCTGCGAGTTTCACATATCATCGCCCGCACCCACTcacatgaaatgtttttgttgggTACAATGGGATCCAAGTCCTGATGCACATCTGTAAAACTCTGTAGCAAACCTCAAAACATCATAGATGCATTGCCTGATTTGGGGGTGAGGGATAAATTTCATCTTTGGCCAAACTACAAGACCTGTTAAAAGGTTTGAGCCAAGGTTAAAggttattttatattgttaagAGACATGATCCATATCAATTTGACTAAAGTCTTTTGAATGGCAAGTTGAAAGACATGAatttacagaaacaaaacatacaaGAGGCTTCTGTGATATGAAAATCTCAAAGGTCAATAACAGCAATGCTCTATTTAGCTAACTCAACTCATTTCtacattacagcattacagctaAACTATTATGCTGGCTATTTAGCTGATATGATTGTGCAAATTGCAAAGGCAGTTGATTCAATTACACTGTTCTTGATGCCCAGGGCTAGTGCAATTCTCTTTCCTCTGATGGAATGCAGGTGTTTTGCATTTCACAGTCTTGATGAGAAATCAACAAGGATGTGttaaaaacagtcctgaagtgTAGAGGAAGTCTGGAATAAAAGATTGCCAGTATGTCCTCATTTCACCCGTCATCCCTCCATCAGCAGTTGCAAGTCCATTTCccctttttctcttcctcaggGTTGGCTTTTGGAGTAAGTTTAATACTCTTGACTGCCTCTGCTTCTTTCCCTCGTTGCCTACTTATCTGCTGTACCAGTTTGTTGAAGATGGTGTCCAACTGCTCTCTGCTGCCACCTTTAGCTGAATAAAGGTAGAAGGGCATTGAGTGGACCTCGGCTAAGTGCCGTGCTTGCTCGATGGTTGAGGCCACCCTAAAGGTCACCAAGTCGGCCTTGTTAGCCACAAGCACGCGAGGCACATCTGGTCCAAGCGAGTGCTGCTGACACTCCTCCATCCAGAGGGGCAGACTGCAGAACGAAGCCGCATTAGTGACGTCATAGACAAAGACGACTGCGTGTACGTTGCGGTAGTAGTGCTGTACCATGCTCTTCCGAAAACGCTCCTGACCCGCC

Function

NR:

description
PREDICTED: ras-related protein Rab-33B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50127 False 1641 lncRNA 0.42 1 7677097 7678737
TU50130 True 1849 lncRNA 0.41 1 7677097 7678945

Neighbor

gene id symbol gene type direction distance location
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding downstream 31022 7630169 ~ 7646075 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding downstream 292934 7361915 ~ 7384163 (-)
LOC113542008 LOC108261848,LOC108262968 coding downstream 338666 7325374 ~ 7338431 (-)
LOC113538928 LOC108261848,LOC108262968 coding downstream 352091 7319099 ~ 7325006 (-)
gstcd gstcd,LOC107095855,LOC106602269 coding downstream 557477 7017457 ~ 7119620 (-)
zgc:153642 NA coding upstream 23707 7702652 ~ 7715901 (-)
hmx4 LOC108262851 coding upstream 144185 7823130 ~ 7825476 (-)
hmx1 LOC108262852 coding upstream 147689 7826634 ~ 7829546 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding upstream 228283 7907228 ~ 7909974 (-)
LOC117596360 NA coding upstream 374549 8053494 ~ 8069324 (-)
G42392 NA non-coding downstream 1325 7675488 ~ 7675772 (-)
G42391 NA non-coding downstream 4233 7671587 ~ 7672864 (-)
G42361 NA non-coding downstream 24877 7568371 ~ 7652220 (-)
G42315 NA non-coding downstream 238208 7436442 ~ 7438889 (-)
G42179 NA non-coding downstream 334416 7342467 ~ 7342681 (-)
G42395 NA non-coding upstream 1875 7680820 ~ 7681430 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding upstream 8352 7687297 ~ 7687689 (-)
G42400 NA non-coding upstream 11766 7690711 ~ 7691027 (-)
G42401 NA non-coding upstream 14269 7693214 ~ 7694493 (-)
G42426 NA non-coding upstream 141705 7820650 ~ 7820861 (-)
maml3 maml3 other downstream 87434 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 472398 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 1857584 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2449130 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2770858 4893902 ~ 4906239 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 455696 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 791041 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 791413 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 804358 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 1075969 8754914 ~ 8783798 (-)

Expression


Co-expression Network