G42522


Basic Information

Item Value
gene id G42522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8175485 ~ 8176073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50268
GGACAGAGAGAATGTGTGAAAAGCAttgaaaattatataaatgtcaAGGGAATTAACAGAGAACATTTACAGCAGATGTATAAAGAGTTTTTCACCACACCTTCTGTACTAACTAGTACTAGTGCTGTACTACCACACTCAGTGCTTTATTAACTAGTACTAGTGCTGTACTACCACACTCAGTGCCTTATTAACTAGTACTAGTGCTGTACTACCACACTCAGTGCTTTATTATCTAGTACTAGTGCTGTACTACCACACTCAGTGCTTTATTAACTAGTACTAGTGCTGTACTACCACACTCAGTGCCTTATTAACTAGTACTAGTGCTGTACTACCACACTCAGTGCTTTATTAACTAGTACTAGTGCTGTACTACCACACTCAGTGCTTTATTAACTAGTACTAGTGCTGTACTACCACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50268 True 425 lncRNA 0.38 2 8175485 8176073

Neighbor

gene id symbol gene type direction distance location
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding upstream 95195 8069821 ~ 8080290 (+)
cpz LOC108263841,LOC108434808 coding upstream 404147 7757610 ~ 7771338 (+)
gpr78a NA coding upstream 420326 7749636 ~ 7755159 (+)
LOC117596357 NA coding upstream 439576 7716040 ~ 7735909 (+)
LOC113543264 NA coding upstream 462939 7704449 ~ 7712546 (+)
paip2b paip2b,LOC108263850,LOC107551309,LOC107674237,LOC103039606,LOC105904045 coding downstream 265712 8441785 ~ 8445916 (+)
dok1a LOC108262454 coding downstream 272584 8448657 ~ 8452951 (+)
si:ch211-89o9.6 LOC108262781,LOC103368813,LOC106456540 coding downstream 280655 8456728 ~ 8464439 (+)
tmem176 LOC108262798 coding downstream 335904 8511977 ~ 8517230 (+)
LOC113539481 LOC108262800 coding downstream 354382 8530455 ~ 8534035 (+)
G42447 NA non-coding upstream 265787 7909424 ~ 7909698 (+)
G42442 NA non-coding upstream 308567 7866675 ~ 7866918 (+)
G42307 NA non-coding upstream 441830 7733442 ~ 7733655 (+)
G42304 NA non-coding upstream 453634 7721649 ~ 7721851 (+)
G42295 NA non-coding upstream 530563 7640935 ~ 7644922 (+)
G42531 NA non-coding downstream 13957 8190030 ~ 8190247 (+)
G42498 NA non-coding downstream 20799 8196872 ~ 8197242 (+)
G42548 htt non-coding downstream 43843 8219916 ~ 8223825 (+)
LOC117596904 NA non-coding downstream 94337 8270410 ~ 8271905 (+)
LOC117596914 NA non-coding downstream 249737 8425810 ~ 8428641 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 504075 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 545345 7620545 ~ 7630140 (+)
G42075 NA other upstream 954462 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1946800 5895431 ~ 6228685 (+)
G41047 NA other upstream 2833735 5318534 ~ 5341750 (+)
G42685 NA other downstream 289674 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 293551 8469624 ~ 8469881 (+)
sprn sprn other downstream 2376186 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2418501 10594574 ~ 10608704 (+)
dntt dntt other downstream 2923520 11099593 ~ 11207862 (+)

Expression


Co-expression Network