G42642


Basic Information

Item Value
gene id G42642
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8189735 ~ 8190276 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50394
gaaaataatagttgaatttataaaaatgaccccgttcaaaagtttacatccccttgattcttaatactgtgttgttacctgaatgatccacagctgtgtttttttgtttactgatagttgttcaagagtcccttgtttgtcctgaacagttaaactgcctgctgttcttcagaaaaatccttcaggtcccacaaattctttggttttccagcatttttgtgtatttgaaccctttccaacaatgactatatgattttgagatccatcttttaacactgaggacaactgagggactcatatgcaactattacagaaggttcaaacgctcactgatgctccagaaggaaaaacttttgaacagaatggagatgtgtacattttgcctaaatatcatattttttcatttagtactgcccttcagaggctacagaagatagttacatgtttcccagaagacaaaataagttaaatttaccctgatcttcaaattcaaaaaggacaaacaagggactcatgaacagctatcactaaacaaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50394 True 542 lncRNA 0.35 1 8189735 8190276

Neighbor

gene id symbol gene type direction distance location
dok7 dok7 coding downstream 66465 8083051 ~ 8123270 (-)
LOC117596360 NA coding downstream 120411 8053494 ~ 8069324 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding downstream 279761 7907228 ~ 7909974 (-)
hmx1 LOC108262852 coding downstream 360189 7826634 ~ 7829546 (-)
hmx4 LOC108262851 coding downstream 364259 7823130 ~ 7825476 (-)
htt htt,LOC107679870 coding upstream 30323 8220599 ~ 8270117 (-)
trnam-cau_1 NA coding upstream 276708 8466984 ~ 8467055 (-)
trnam-cau_2 NA coding upstream 277760 8468036 ~ 8468107 (-)
trnam-cau_3 NA coding upstream 278795 8469071 ~ 8469142 (-)
tmem132a LOC108262772 coding upstream 281254 8471530 ~ 8479019 (-)
LOC113544822 NA non-coding downstream 209972 7977141 ~ 7979763 (-)
G42426 NA non-coding downstream 368874 7820650 ~ 7820861 (-)
G42401 NA non-coding downstream 495242 7693214 ~ 7694493 (-)
G42400 NA non-coding downstream 498708 7690711 ~ 7691027 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding downstream 502046 7687297 ~ 7687689 (-)
G42650 NA non-coding upstream 13921 8204197 ~ 8204405 (-)
G42665 NA non-coding upstream 108904 8299180 ~ 8299444 (-)
G42671 NA non-coding upstream 190064 8380340 ~ 8380715 (-)
G42894 NA non-coding upstream 302792 8493068 ~ 8493304 (-)
G42914 NA non-coding upstream 360854 8551130 ~ 8551355 (-)
maml3 maml3 other downstream 600072 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 985036 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 2370222 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2961768 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 3283496 4893902 ~ 4906239 (-)
trnam-cau_4 NA other upstream 279710 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 280082 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 293027 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 564638 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 610967 8801243 ~ 8853794 (-)

Expression


Co-expression Network