G42671


Basic Information

Item Value
gene id G42671
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8380340 ~ 8380715 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50426
agagaacgcgtctccactgctctagagtccagtggcggagtgctttacaccactgcatccgacgctttgcattgcacttggtgatgtgtggcttggatgcagctgctcggccatggaaacccattccatgaagctctctgcgtactgtacttgggctaatctgaaggtcacatgaagtttggagctctgtagcaattgactgtgaagaaagtcgacgacctctttgcactatgcgcttcagcatccgctgacccctctccgtcagtttccgtggcctaccacttcgtggctgagttgctgttgttcccaaactcttccattttgttatgataaagctgacagttgactgtggaatatttaggagcgaggaaatttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50426 True 376 lncRNA 0.50 1 8380340 8380715

Neighbor

gene id symbol gene type direction distance location
htt htt,LOC107679870 coding downstream 110223 8220599 ~ 8270117 (-)
dok7 dok7 coding downstream 257070 8083051 ~ 8123270 (-)
LOC117596360 NA coding downstream 311016 8053494 ~ 8069324 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding downstream 470366 7907228 ~ 7909974 (-)
hmx1 LOC108262852 coding downstream 550794 7826634 ~ 7829546 (-)
trnam-cau_1 NA coding upstream 86269 8466984 ~ 8467055 (-)
trnam-cau_2 NA coding upstream 87321 8468036 ~ 8468107 (-)
trnam-cau_3 NA coding upstream 88356 8469071 ~ 8469142 (-)
tmem132a LOC108262772 coding upstream 90815 8471530 ~ 8479019 (-)
vps37c LOC108262788,LOC108426122 coding upstream 113421 8494136 ~ 8505726 (-)
G42665 NA non-coding downstream 80896 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 175935 8204197 ~ 8204405 (-)
G42642 NA non-coding downstream 190064 8189735 ~ 8190276 (-)
LOC113544822 NA non-coding downstream 400577 7977141 ~ 7979763 (-)
G42426 NA non-coding downstream 559479 7820650 ~ 7820861 (-)
G42894 NA non-coding upstream 112353 8493068 ~ 8493304 (-)
G42914 NA non-coding upstream 170415 8551130 ~ 8551355 (-)
G42970 NA non-coding upstream 373436 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 387273 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 476543 8857258 ~ 8861508 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 163789 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 790677 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 1175641 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 2560827 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 3152373 5203706 ~ 5227967 (-)
trnam-cau_4 NA other upstream 89271 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 89643 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 102588 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 374199 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 420528 8801243 ~ 8853794 (-)

Expression


Co-expression Network