trnak-cuu


Basic Information

Item Value
gene id trnak-cuu
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8469624 ~ 8469881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50449
GCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCAACACGTCTTTTCAGACTTTCCGCCGTGAACGTAAGAACTACAACCCGAAGGTTCAGGGAGATGCTTCTCGGATGCAGTCACATGTCGAAAATAACATCCATCAATACACATTAATGGTGTTAGTAAGCATACTAaaactagatagatagatagacaggtcCCCAAACCCTTTTTCCGTTTCTT
>trnak-cuu
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50449 True 253 lncRNA 0.46 1 8469629 8469881
trnak-cuu False 73 tRNA 0.62 1 8469624 8469696

Neighbor

gene id symbol gene type direction distance location
si:ch211-89o9.6 LOC108262781,LOC103368813,LOC106456540 coding upstream 5185 8456728 ~ 8464439 (+)
dok1a LOC108262454 coding upstream 16673 8448657 ~ 8452951 (+)
paip2b paip2b,LOC108263850,LOC107551309,LOC107674237,LOC103039606,LOC105904045 coding upstream 23708 8441785 ~ 8445916 (+)
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding upstream 389334 8069821 ~ 8080290 (+)
cpz LOC108263841,LOC108434808 coding upstream 698286 7757610 ~ 7771338 (+)
tmem176 LOC108262798 coding downstream 42096 8511977 ~ 8517230 (+)
LOC113539481 LOC108262800 coding downstream 60574 8530455 ~ 8534035 (+)
LOC113539337 NA coding downstream 66958 8536839 ~ 8546738 (+)
si:dkey-9i23.8 LOC108262892 coding downstream 148844 8618725 ~ 8623407 (+)
si:dkey-9i23.6 NA coding downstream 157022 8626903 ~ 8634451 (+)
LOC117596914 NA non-coding upstream 40983 8425810 ~ 8428641 (+)
LOC117596904 NA non-coding upstream 197719 8270410 ~ 8271905 (+)
G42548 htt non-coding upstream 245799 8219916 ~ 8223825 (+)
G42498 NA non-coding upstream 272382 8196872 ~ 8197242 (+)
G42531 NA non-coding upstream 279377 8190030 ~ 8190247 (+)
G42717 NA non-coding downstream 81617 8551498 ~ 8551884 (+)
G42718 NA non-coding downstream 82830 8552711 ~ 8553382 (+)
G42714 NA non-coding downstream 141720 8611601 ~ 8650995 (+)
G42763 NA non-coding downstream 188344 8658225 ~ 8659561 (+)
G42782 NA non-coding downstream 294730 8764611 ~ 8767603 (+)
G42685 NA other upstream 3312 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 798214 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 839484 7620545 ~ 7630140 (+)
G42075 NA other upstream 1248601 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 2240939 5895431 ~ 6228685 (+)
sprn sprn other downstream 2082378 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2124693 10594574 ~ 10608704 (+)
dntt dntt other downstream 2629712 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 3212983 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 3237054 11706935 ~ 11707005 (+)

Expression


Co-expression Network