G42717


Basic Information

Item Value
gene id G42717
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8551498 ~ 8551884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50484
ATTTTTCCTAATTTAAAGTCTGATGAAACCTGTAGGgataaaaatattaatcataTATAAGACCAGCCACACAGTTAAAGTAACAAGAACACCTCTATATTCATGCATAATCTCAGTGTTTACTACAAACATTTCAATCAGTTATCTATATTAATGAACAGCATGCACTCAACACAAGCCTAAAGGTGTTTCATGCTCATTAGTACTTTCTCAGTCGTGTCTGAAGAAATTAATGCTTTTCACAGAGGTGAAATATTTCACAGCTTTTACAAGAATTGACCACTACATGTCAGTCAAAGACCACAAATGAATATAGCTGCTCataataattactatttatTGCTATCATTTCACCAGGGTGTGGTGCTGTGTAGTGCTCGATCCTTC

Function

NR:

description
PREDICTED: cytochrome c1, heme protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50484 True 387 lncRNA 0.34 1 8551498 8551884

Neighbor

gene id symbol gene type direction distance location
LOC113539337 NA coding upstream 4760 8536839 ~ 8546738 (+)
LOC113539481 LOC108262800 coding upstream 17463 8530455 ~ 8534035 (+)
tmem176 LOC108262798 coding upstream 34268 8511977 ~ 8517230 (+)
si:ch211-89o9.6 LOC108262781,LOC103368813,LOC106456540 coding upstream 87059 8456728 ~ 8464439 (+)
dok1a LOC108262454 coding upstream 98547 8448657 ~ 8452951 (+)
si:dkey-9i23.8 LOC108262892 coding downstream 66841 8618725 ~ 8623407 (+)
si:dkey-9i23.6 NA coding downstream 75019 8626903 ~ 8634451 (+)
pold4 pold4 coding downstream 118914 8670798 ~ 8673429 (+)
si:dkey-28b4.8 si:dkey-28b4.8,LOC108262771,LOC108434786,LOC107664566,LOC107551445,LOC107556825 coding downstream 123700 8675584 ~ 8712889 (+)
slc43a1b LOC108262782,LOC108412479 coding downstream 172024 8723908 ~ 8739750 (+)
LOC117596914 NA non-coding upstream 122857 8425810 ~ 8428641 (+)
LOC117596904 NA non-coding upstream 279593 8270410 ~ 8271905 (+)
G42548 htt non-coding upstream 327673 8219916 ~ 8223825 (+)
G42498 NA non-coding upstream 354256 8196872 ~ 8197242 (+)
G42531 NA non-coding upstream 361251 8190030 ~ 8190247 (+)
G42718 NA non-coding downstream 827 8552711 ~ 8553382 (+)
G42714 NA non-coding downstream 59717 8611601 ~ 8650995 (+)
G42763 NA non-coding downstream 106341 8658225 ~ 8659561 (+)
G42782 NA non-coding downstream 212727 8764611 ~ 8767603 (+)
G42783 NA non-coding downstream 217440 8769324 ~ 8771063 (+)
trnak-cuu NA other upstream 81617 8469624 ~ 8469881 (+)
G42685 NA other upstream 85186 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 880088 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 921358 7620545 ~ 7630140 (+)
G42075 NA other upstream 1330475 7203950 ~ 7221023 (+)
sprn sprn other downstream 2000375 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2042690 10594574 ~ 10608704 (+)
dntt dntt other downstream 2547709 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 3130980 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 3155051 11706935 ~ 11707005 (+)

Expression


Co-expression Network