G42782


Basic Information

Item Value
gene id G42782
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8764611 ~ 8767603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50572
GCCAGGTTCTATATTTATTCCTTAGTGTCTGAATACAagaacaaacatttaaacatatacaCTGTGAAGTACTGCATGGATCCATCCTTCATCACAGAcattctcccacacacacccccaccaaTCACACCTAAAAGGATACGTGACAGCTGAGTGTACTTGGTCTAGCTGCTGTGTGTGGTACAGGATGAAGAGCAGCCCAAAGCCGAAGACGCCCATGATGTGAGCTGTCAGGGAGAGCAGGAACAGGAAGAAGTAGCGGTAGTTCCTCCTGCCTATACAGTTGTTCACCCACGGACAGTGGTGATCAAAATCCTACAGGATGAGATGGAGCATTGGAGAAAAGGAGCTTGCATTTTCTGTGTCATTTACTTTCAGAGCATAGCATTGGAGCTTACAGATATGGAGAGAGTCCCGAAATGACAACGGTCTCTACACAGAGCTCCAACGACATTTCCACCTGAACGGTTCGGCAGCAGAATGCTTTTGCCCAATCCGATTTACGCAAAATGGTTAGATGACAGGGGTGTGACTTAATTTAGCTACTactttgtatttgtatgtgtactTGGGTATATTCATACCTCCACACAGTTGTCACACACTGAGCAATGTGAGCAGCGAGGTGGCCTGTAGAACCGGCAGGTTGAACACCACTTCATGCGCACCTGTATGCCCCGAATCTCCACTGTCTTATAGAGCGGCGCTCGGAAATCATCCTCCTTATCCTCATCTTCCTCAGCTGCAACACAGTGTTATAGACTATATTCATTCAAATTTAGAAAATCTAAATTTGAGAATTCCCATGTTATAGTTAACttctaaaaatacaaaataaatgtctcctcaaaaaacttatcaatgattacacacaattttttgGAGTGTCTGCCTTACGAGTGCCTGTGTAAGCTGTTGTtgcagaaacaataacatattataactagagcattaatatacaccttgcagctggaactataGACCGCTGAGAGCGACACGTCACTCTGAAGTCAGCAGGGCCTCCTGTTTGCAGAAACATTACGGGAGACCATAGTGATTTTTAAGAGCAAGCCAGAATTTGTTTCCTAAAATGCCACATTGTGCTGTTGGGCGTCAGaatcagaaaagtgttcataaaTACATTAGATTTTACCAAATACTATCAAGTCAGACACCCTTCCTAGCCAACAGAATACAGTTGTGTTTACAGGCAGTTGGATGGATAACTGGTCTAAGGAGTGCTGTCTTTGCAGGGCCCAATTCATCTcagctaaatagctagctatcATATCAGTAAAGTTAGTTTGCTAAGAATGAAACAGGCTAATAACAAACCTATATAGCACGCCTAAAATCTACATCAACTAGCGAGCGAATGCTAGATAACCAGGTCATGTTCTTACTGAGGAGTTGCCTATAATTGGCAGGTTTAGCCAGCTAACTTTGTTCAGCTTACAAATGCATCAGTTTTATTGCATCTGTTTGGGCAGCACCTCGGCTTTCAGTGCCAGATGTCCTCGATACTGTCATCATAAAACATTAAGTCTTGAAGGTgcccacaaacaacaaaattaTAAGCATCAAGAGATTTGTGTGCCTTCAGTTTTTCTGCAGTATAAACGATCAGAGTTTCTATGTATAAATGTCCAGCCACTGCCAAGCCATAAGGAGTTACACCATTTGAAAATGTTAGTTTAGCTGAATAGCACTCCCTGTCTGTTAGCggtaatccataataataagtaCATAACATTTTAGCTACTGTCATACTACTAAATAAAATTGTTGatagattcttcagtcagattataaccaAGTTGTGGCTACTGAGGTCTTTTTGTAACCAGGCTGCACACGCATCTCAAAGAGTGATATACATAAATTCTATAGAAGCCTGCATATTTTGGGTACCATCATTTATCAGAACctcaaaaactacaaaaaaaacagactgcaaCAGATACATGATGACTTAGTGCCCTCTGAAGTGCCCTCTTTTGTACAAAAAGCACATACATATCATATTTTATAGTGAGATTGTTGGCTACCTCTTGGGAAGATGCCTGGGTCCATGAAGGTGGCCATACAGAAGTTGGCCAACACAAAAAGGAAGATGATGCCATTGTATATTGGTATGGCGACCGAAAAATTCTCTGAAAGCCACGGGCACCTGAGAcataaagggaaaaagaaatggGATAAAGAAAAGCAGTTTAAAATATCAAGTCAGACATTCACATGTCACCACATCTCATGTGCATGGACTGACAGTCTGAGTATTTGCCAGTACGGTGATGAATTCAGATGTAAGTTATGAGAGTTCGTTAAGGTTTAGCCCATGTTTAGTGTTATATGCTGGCTATTCCATCATACacatgaactcacacacacaaaagatggATCAAAGCAGTCATCATGTAGcagaagaaagaacaaaaaagacaCAAGTTTGAAAGATCAATGAGCAAGTTGAGGTTAtaagtccacaagacacaataataactgaatttacacaaataaaaaagttcaaaagtttacatatgttcaattcttaatactgtgtgctgttacctggatgatcaacaactgtttttacgttttgtgatagttgttcatgagccccttgtttgtcctgagcagttaaacttcTGAACTTGTTCATTTGTGAAAATTCAGTATTaacttcagtaataaattaagtAATTGTGTTTTGTGaactttatgtaaacatctgttatgtgaaatagcttattcagggcattacttaaacaaaatgtaaaaaaaaacaaaatgtaatttttatgatccctcttatttttttttaaattattaacattttgcagattctgcaaggcgcaTGTAAACTTATGATGCCAGCTGTAATTTCTTGGTGTGGAATGACAGGAAAAGATTTCCAACAATCTGTAAAGACgattttactatttaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50572 True 2949 lncRNA 0.39 2 8764611 8767603

Neighbor

gene id symbol gene type direction distance location
tmx2b tmx2,LOC108412483,LOC105022872,LOC106602574,LOC106609908 coding upstream 12765 8743828 ~ 8751846 (+)
slc43a1b LOC108262782,LOC108412479 coding upstream 24861 8723908 ~ 8739750 (+)
si:dkey-28b4.8 si:dkey-28b4.8,LOC108262771,LOC108434786,LOC107664566,LOC107551445,LOC107556825 coding upstream 51722 8675584 ~ 8712889 (+)
pold4 pold4 coding upstream 91182 8670798 ~ 8673429 (+)
si:dkey-9i23.6 NA coding upstream 130160 8626903 ~ 8634451 (+)
slc43a3a slc43a3 coding downstream 130687 8898290 ~ 8908567 (+)
vwa11 LOC108262774 coding downstream 164571 8932174 ~ 8945247 (+)
si:ch73-109d9.2 LOC108262783 coding downstream 188523 8956126 ~ 8961692 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding downstream 196300 8963903 ~ 8967930 (+)
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding downstream 201386 8968989 ~ 8981873 (+)
G42763 NA non-coding upstream 105050 8658225 ~ 8659561 (+)
G42714 NA non-coding upstream 113616 8611601 ~ 8650995 (+)
G42718 NA non-coding upstream 211229 8552711 ~ 8553382 (+)
G42717 NA non-coding upstream 212727 8551498 ~ 8551884 (+)
LOC117596914 NA non-coding upstream 335970 8425810 ~ 8428641 (+)
G42783 NA non-coding downstream 1721 8769324 ~ 8771063 (+)
G42792 NA non-coding downstream 45233 8812836 ~ 8870926 (+)
G42833 NA non-coding downstream 185919 8953522 ~ 8954026 (+)
G42848 NA non-coding downstream 244883 9012486 ~ 9015041 (+)
G43137 NA non-coding downstream 456760 9224363 ~ 9224593 (+)
trnak-cuu NA other upstream 294730 8469624 ~ 8469881 (+)
G42685 NA other upstream 298299 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1093201 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1134471 7620545 ~ 7630140 (+)
G42075 NA other upstream 1543588 7203950 ~ 7221023 (+)
sprn sprn other downstream 1784656 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1826971 10594574 ~ 10608704 (+)
dntt dntt other downstream 2331990 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2915261 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2939332 11706935 ~ 11707005 (+)

Expression


Co-expression Network