G42848


Basic Information

Item Value
gene id G42848
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9012486 ~ 9015041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50649
CAGCCATACAGGCATTGATGCATGCACCCAGTGGACAATACACTAGTAATTGAATGGTTTTTATGCTCCTCTTTGTAATCCTTCCCTTTCAAGATCAGTCACATGCTGGAAAACACATTCAGTCTAAAATTTAAAGGGAACACgaatttttatgaaaattagTAATCAATTagcaagtaaggaataaaacacgaccaggcatgctgttatattaTTTCCCGATAACCATACAGCCCTAAGTGTTTAATTGTGCCgtgttgtatgtttttaattatcAAAGAACAAATCactctttttgtctgtttatagttatgttcaGTGTTGGAACATTTCCAAAGCAACCTGTTAGAATAGCTATAAAGAGTtgttctcctctctttcttcttaataagacaaaaatactgCAGCGCGTCATGTtgccaagaaactggaaagtccTTCATCCCGAAGACGTTCTGTTTCtgtgctttacctctgactgttagaaagcgctgacactggagactccttcaaaaataAGCCTCTTCTtacagaatacatttttaaatctgtaagtACGGTGTTACTctagaaacgataatgtgttagaacaagcgcattaatataaaaatgtgatttgccatgCAGCTGGGACTGCTGTCAGAGTGGCTCttaagttaatcaacacctcctgaccagtCAGCTTTGAGAATTCAAGAGTTCTGTAGTgtaatttactttaatacacCAGTAGTGTTGCAATAGAATTACACCAGTTTGCAAGAAGATATTTGTGTGTGGGcggtttgatttatttattttttttgttttttctagcTGCCCCATTAGTTAACATAGAAAGAAGTCAGACCTCACAGATACTGAACGGTACTGCTAGGAAGCTGAATACTGACGTATGTAAGCTCCATTTCTTTCCTGTGGTCAGCATTTGAGTGATTGTTTGTTTAACTATTGTACAGTAATATCCAGCCGCAATACATGGAGCAACTGTGGCACTGAGCTCCAATTCAAACCTTATTAGACGTAAGAGTTAGCAGTAACACATAACAATAAGCAGGTCTTTTCAAATTGGAGTCAAATAAGTAAATATCCACATGATTCACAAGaaacaatttgtttttgtttaaaacttCTCTTAAGGCTGGAAATAGAAATCTCTGGAAATGATGGATGAAAATgcagttttgggtttttttttgtttttttttttttttttttttttttttttaaatctacttCAATATGTTTTCAGACCTCTCTCATGGGTCTACTGTCTAAGTGTAGCtgcacatttgtaaatattcaatttacattttctttcctcctgAATGATTCTGCCAACTCTTTATAAAGTTGTACCTCTTTTTCTGGGAAATGGTGGAAGAACACAAACTTTACTTTTCTCCTTTCATAGTTACCACACTCTGTTTGAGTGCTCTGCAGGTCACCTTTAATTAAATTCCTTCTAAATCTCACATCCTGCTCCAAGATTTCCACTAATTACTGCTTGCTCAGGAATCCGTCATACTAGCTGCCTAATGTAGTAATGGACCGCTGACTGAAAGACACACAAATGATACGATAGAATGAGCTGAGAGATTGGGTAATGTGCTACATAACATATGAAATGTTAGTTTTATGCTGGTTAATGCCTTGTTGTTCTGAGTGATGGCCATGTGCTAAAGTACTCGTTCCAGGAAGTCATATGAGAAGCAGGAGTGTCTGACACACTGACCTTTATTTGCTCATAAAAGAGTTTCCTAAGGCATTTCTGGCCTTGTTGAAGatagtgctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcgcaTGGGTTCAAGATTTATGAGGGCTGTAGAAATCCCTGTGAGCACATCCCTTCTACTTCTACAATGAAGTTCTGAGCAAGCCTAAGCCTCTTAAACACTTCCTTTTGCGTAAAGATATGAGGTGTCTTCTctaatattgcttttttttgctgaatgGCCAGATTATGTAACGTAGGAGAGATCTAAGGTAAATGAAATCAGCTGTGGATTTCTCATCGGCGTGTTTGTTTCATAAATGTCTGTATGCAGCACTCGACTGCTATATTAAAAAAGGTTATTTGAGAAAGTGTGCTCTGTAAGAGTTTGTCGAAATATTGCCACTCCAGCACTGGTGATGGTAAGTCTCACTTGCTGTGACGGACTcgctgaaactggacagttgaagaccgGAAAAACACtaggtgattattttttttttgattatttatttttctgatcttcaactgtccagtttgggtgatagcctcagattcttgttcttggctgacaggagtggaacccagacCATAAGATGCTAAAAGAAATCTCTAAGAACCCCAGAATTTCATCACTGTGTCTGCAAGTATCTTTTGCCACTGTTGATGTCAAAGTGTCTGTCTCTATTATTAGAAAGAGACTGCACAAATCTGACCTGCATGGGAGGTTTGCCAGGAGGAAGCCTTTGCTGtccaaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50649 True 2532 lncRNA 0.38 2 9012486 9015041

Neighbor

gene id symbol gene type direction distance location
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding upstream 30613 8968989 ~ 8981873 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding upstream 44556 8963903 ~ 8967930 (+)
si:ch73-109d9.2 LOC108262783 coding upstream 50794 8956126 ~ 8961692 (+)
vwa11 LOC108262774 coding upstream 67239 8932174 ~ 8945247 (+)
slc43a3a slc43a3 coding upstream 103919 8898290 ~ 8908567 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding downstream 114938 9129979 ~ 9143030 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding downstream 137289 9152330 ~ 9211293 (+)
rgs17 rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476 coding downstream 301750 9316791 ~ 9338616 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding downstream 367597 9382638 ~ 9408518 (+)
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding downstream 406025 9421066 ~ 9487539 (+)
G42833 NA non-coding upstream 58460 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 141560 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 241423 8769324 ~ 8771063 (+)
G42782 NA non-coding upstream 244883 8764611 ~ 8767603 (+)
G42763 NA non-coding upstream 352925 8658225 ~ 8659561 (+)
G43137 NA non-coding downstream 209322 9224363 ~ 9224593 (+)
G43186 NA non-coding downstream 329014 9344055 ~ 9347236 (+)
G43330 NA non-coding downstream 473718 9488759 ~ 9488959 (+)
G43337 NA non-coding downstream 479936 9494977 ~ 9495210 (+)
G43360 NA non-coding downstream 511820 9526861 ~ 9527159 (+)
trnak-cuu NA other upstream 542605 8469624 ~ 8469881 (+)
G42685 NA other upstream 546174 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1341076 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1382346 7620545 ~ 7630140 (+)
G42075 NA other upstream 1791463 7203950 ~ 7221023 (+)
sprn sprn other downstream 1537218 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1579533 10594574 ~ 10608704 (+)
dntt dntt other downstream 2084552 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2667823 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2691894 11706935 ~ 11707005 (+)

Expression


Co-expression Network