LOC113539440


Basic Information

Item Value
gene id LOC113539440
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8483303 ~ 8492983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50701
cacgTGAACATTCTTGCAGAGGTGAATGAACACTCAATATCTTTCACTCTTTgatattttttctcctttgatgtttttttcttcaagtgTCCTACCATAGAGGGAAGGCTGGTAATCCCAATAACAATACAACGAAGAGGCAGTCCTATCCTGGTTTGGAAAGACTTTCGGTAAATCCCAGCAGAGAGCCTTCGTCGAACAGGAACAGTGACTACGACTCATATGGCGGTTAAACTCCTCTCGTACAGTGTAGGAGTTtgtgaaaatatttcttttgaaGGCTCTGATGTTGTGTGAAGATCAACATGGTAATCGTAACAGCCGGTCTGATATTAAATTTTGGCaaacaaaataatgtatatttcataGTGTTAGCCAGACTTTTACTTCATCTGCA
>XM_026935185.2
CGGAGCAGTGTGCAGAGAGCAACATTCAAGATGTGGAGATGCACTGTATGGAGAGACTGAGTTAGACAGAGATGATGGGGgaggagaaatgaaaaaaggatAGTTTTAACACCTCTGCCTGTTTCCTTTCGCTTCATTTGGATGTGTTGCTTGCTCTATACattgctttgtgtgtttttcagctAAGTTACTGATGGACCACCTATTGCTGCTGGTGCTCATGCCGGCTGTTCTCGCTGGCGAATCAATTATTGGAAACGGGACTACCACTGAATCCACTCCTGCTCATAATGTTACTAGTTCCATACCTACATGTGCACCCACAATCACCAATAAGCCCAATATTGCGGCACCGCCGCCTGCAGTGGGCAGGATAAAGGTGAAATGGTTGAAGGACAACCAGTGTCAGGGCTTCATATACTTCTCCTTAAATTATACACGACCTGAGAAGTATCTTTGTTTCAATactgattatattataaaatccAATTTGGGTTATGAGTTATGTGAGGAGAGGAGATGTGGAGAGTTCCTTGGCTTCAAGTCCCAGAAGCCCCAGAAGCCCCAGGAGTGGCAAGGTTATACGATCTATGAAAACCTAACTGGTTCCGATGAAAAAGCATGCACTGGAATATACGTTACCTGcaaagATGTAGAAAGCAAAGAACTGGTGGTCTATAAAGTAATAACAGGCTTGTTACTGACACTGATCCTTGCCATCCTTCTCTGTCGATTTGCACAGCCAACATACATAGCTGTCCGCAAGAGATTTTCACAGAAGCAGCAGAATCGTTGGATCGGCCCAACACAGAGCCAGAGTGtgTCCTACCATAGAGGGAAGGCTGGTAATCCCAATAACAATACAACGAAGAGGCAGTCCTATCCTGGTTTGGAAAGACTTTCGGTAAATCCCAGCAGAGAGCCTTCGTCGAACAGGAACAGTGACTACGACTCATATGGCGGTTAAACTCCTCTCGTACAGTGTAGGAGTTtgtgaaaatatttcttttgaaGGCTCTGATGTTGTGTGAAGATCAACATGGTAATCGTAACAGCCGGTCTGATATTAAATTTTGGCaaacaaaataatgtatatttcataGTGTTAGCCAGACTTTTACTTCATCTGCACCCACATGTTCTATCACTATTAATTCATGAATTCATAAATTTGCTACCAATTTATATGTTTTCACTTTTGTTATAACACATAAATTTATAATCTTTCTGATAAACTAGTCCCACAGGGCATactaaatagtttatttattggTTTGCTTTTTTGACCTGAGATTGATTCATAAACCTAACAAAATTGTTCTTTATTTGCTTGTTCTTGCTCTGAATAATTAATAGTCTATTATATTGTCTcttattgttatattgtttaGATTGTATCtattttgattttaattaatgcattCTGTTGTAGAGATTGAATATGTAATGTGATACAGTTTTAATGAAGTGCTTAAATAACTATTTGGTAATGCTTTACTTTAAGGTTTCTGTAACtagcattatttactgcattggTTAACATAAACAAACTATGAACGCcagcattaataaaccataagtACTGTGTATTGATTGATTTTGTTAAATTGTTAACGAAGTACACCTGTATTTACTGTTTCttcaaaataagaaagaaaaataagtcCACATATAttagtaaaaatgaaatgatagcATGATGCTATGTGCTGTCAGCTTCCTGAACTCTGGCCTCCAGGTGTAAATACTGGAACTTGCTTTTCAGCCTCAGTTCTCAATTTGACCAGTTATCAAACACGAACATGTTAACTAAGGTGTTGGTTCATTTTGTTCAGTGTGGGATTCATTTTACACCCTGATGGTATGAACATTGATTTATTCAGGTGTTGAATATTTGGCTTATTTAGTATTTGATTTATTAAGTGTTAGTTATTTTAGGTTTATTCACTAATGTGTTACATAATGTCAGTTAAGTGGATCTAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU50701 False 397 lncRNA 0.39 2 8484155 8486010
XM_026935185.2 True 1983 mRNA 0.37 7 8483303 8492983

Neighbor

gene id symbol gene type direction distance location
tmem132a LOC108262772 coding downstream 4284 8471530 ~ 8479019 (-)
trnam-cau_3 NA coding downstream 14161 8469071 ~ 8469142 (-)
trnam-cau_2 NA coding downstream 15196 8468036 ~ 8468107 (-)
trnam-cau_1 NA coding downstream 16248 8466984 ~ 8467055 (-)
htt htt,LOC107679870 coding downstream 213186 8220599 ~ 8270117 (-)
vps37c LOC108262788,LOC108426122 coding upstream 1153 8494136 ~ 8505726 (-)
LOC113539365 NA coding upstream 60474 8553457 ~ 8562707 (-)
LOC113539349 NA coding upstream 73578 8566561 ~ 8573850 (-)
kdm2aa LOC108262769,LOC108434796 coding upstream 89207 8582190 ~ 8604478 (-)
zgc:165520 zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222 coding upstream 112106 8605089 ~ 8610844 (-)
G42671 NA non-coding downstream 102588 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 183859 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 278898 8204197 ~ 8204405 (-)
G42642 NA non-coding downstream 293027 8189735 ~ 8190276 (-)
LOC113544822 NA non-coding downstream 503540 7977141 ~ 7979763 (-)
G42894 NA non-coding upstream 85 8493068 ~ 8493304 (-)
G42914 NA non-coding upstream 58147 8551130 ~ 8551355 (-)
G42970 NA non-coding upstream 261168 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 275005 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 364275 8857258 ~ 8861508 (-)
trnae-cuc_7 NA other downstream 12874 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 13246 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 266752 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 893640 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 1278604 7161474 ~ 7204699 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 261931 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 308260 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 731893 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1506976 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1643327 10136310 ~ 10161523 (-)

Expression


Co-expression Network